Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B13
(1333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 39 0.001
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.12
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.27
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.36
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.47
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 3.3
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 4.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.7
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/46 (45%), Positives = 21/46 (45%)
Frame = -3
Query: 929 RGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXXXGXXXGXGG 792
RG GG GG GG GG GGG GGG G G G GG
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGG-ARGGGRGGARGGRGGRGG 52
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/48 (41%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -3
Query: 926 GXXGGXGGGGGGXXG---GGXXXGGGXXAXXXGGGGGXXXGXXXGXGG 792
G GG GGG GG G GG G G GG GG G GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 31.5 bits (68), Expect = 0.27
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = -3
Query: 914 GXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXXXGXXXGXGGWXXXXRXGGXXAXXXEGXE 735
G GG GG GG GG GG GG G G G R G A G
Sbjct: 6 GSRGGRGGSRGGRGGFNGG-----RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGS 60
Query: 734 GGXXWRGGXR 705
G RGG +
Sbjct: 61 SGG--RGGAK 68
Score = 30.7 bits (66), Expect = 0.47
Identities = 23/68 (33%), Positives = 23/68 (33%)
Frame = -3
Query: 1064 GXXXGXXGXRGXXGXXXXXXLXGGXGXXXXXEGXGGEXXEEVXSXRGXXGGXGGGGGGXX 885
G G G RG G GG G G GG RG GG GG GG
Sbjct: 6 GSRGGRGGSRGGRGG-----FNGGRGGFGG--GRGGARGGGRGGARGGRGGRGGARGGRG 58
Query: 884 GGGXXXGG 861
G GG
Sbjct: 59 GSSGGRGG 66
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = -3
Query: 917 GGXGGGGGG-XXGGGXXXG-GGXXAXXXGGGGGXXXGXXXGXGGWXXXXRXGGXXAXXXE 744
G GG GG GG G GG G GG G G GG G +
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 743 GXEGG 729
G +GG
Sbjct: 66 GAKGG 70
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 968 GXGGEXXEEVXSXRGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGG 825
G GG + G GG GG GG GG GG G GG
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGG-RGGARGGRGGSSGGRGGAKGG 70
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/70 (37%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = -3
Query: 995 GXGXXXXXEGXGGEXXEEVX--SXRGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGGX 822
G G G GGE G GG GG GG GG GGG GGG G
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG--FGGGPGG 260
Query: 821 XXGXXXGXGG 792
G G GG
Sbjct: 261 FGGGPGGHGG 270
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = -3
Query: 998 GGXGXXXXXEGXGGEXXEEVXSXRGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXX 819
GG G G G G GG GGG GG GG GGG G GG
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Query: 818 XG 813
G
Sbjct: 271 PG 272
Score = 34.3 bits (75), Expect = 0.039
Identities = 28/87 (32%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Frame = -3
Query: 926 GXXGGXGGGGGGXXGG-------GXXXGGGXXAXXXGGGGGXXXGXXXGXGGWXXXXRXG 768
G GG GGG GG G G G G GG GG G G GG+
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 767 GXXAXXXEGXEGGXXWRGGXRXXGEXG 687
G G GG + GG G G
Sbjct: 248 GGGLGGFGGGPGG--FGGGPGGHGGPG 272
Score = 32.3 bits (70), Expect = 0.16
Identities = 26/73 (35%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Frame = -3
Query: 917 GGXGGGGGGXXG--GGXXXGGGXXAXXXG-GGGGXXXGXXXGXGGWXXXXRXG-GXXAXX 750
G GGG GG G GG G G G GG G G G GG G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 749 XEGXEGGXXWRGG 711
G GG GG
Sbjct: 244 PGGFGGGLGGFGG 256
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 730 PPSXPSXXXAXXPPXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPPP 867
PP P P PP P PPPPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +1
Query: 712 PPRHXXPPSXPSXXXAXXP-PXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPPP 867
PP P P+ P P PP P PPPPP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-----PPP 783
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -3
Query: 929 RGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXXXGXXXG 801
RG GG GG GG GG GGG GG G G G
Sbjct: 144 RGGRGGSRGGFGGNSRGG--FGGGSRGGFGGGSRGGSRGGFRG 184
Score = 31.1 bits (67), Expect = 0.36
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -3
Query: 926 GXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGG--GGXXXGXXXGXGG 792
G GG GG GG G GG GGG GG G G G
Sbjct: 142 GFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -3
Query: 917 GGXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXXXGXXXG--XGGWXXXXRXG 768
GG GG GG G GG GG G G G GG+ R G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 4.4
Identities = 24/70 (34%), Positives = 24/70 (34%)
Frame = -3
Query: 914 GXGGGGGGXXGGGXXXGGGXXAXXXGGGGGXXXGXXXGXGGWXXXXRXGGXXAXXXEGXE 735
G G G G G GG GG GG G G GG GG G
Sbjct: 129 GARNGPAGRGGRGGFRGG--RGGSRGGFGGNSRG---GFGGGSRGGFGGGSRGGSRGGFR 183
Query: 734 GGXXWRGGXR 705
GG RGG R
Sbjct: 184 GGS--RGGFR 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.36
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +1
Query: 688 PXSPXXRXPPRHXXPPSXPSXXXAXXPPXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPPP 867
P S PP PPS P A P PP P P P PP A PPP
Sbjct: 424 PPSAPPSLPPS--APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP---AAPAPPP 478
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.47
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +1
Query: 688 PXSPXXRXPPRHXXPPSXPSXXXAXXPPXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPP 864
P P PP+ P P PP PP P P PPP P A P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSA-----PPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 758 PPXRPXAXXXXTPPPXXXXPXXPPPXXXXXPPXXXPP 868
PP RP + PP P PPP PP PP
Sbjct: 1690 PPVRPQS----AAPPQMSAPTPPPPPMSVPPPPSAPP 1722
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/120 (22%), Positives = 30/120 (25%)
Frame = +1
Query: 694 SPXXRXPPRHXXPPSXPSXXXAXXPPXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPPPXX 873
SP P H PPS P P PP P P P P A PP
Sbjct: 981 SPTSEPPKDH--PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA---PPIP 1035
Query: 874 XXXXXXXXXXXXXXXXXPRXEXTSSXXSPPXPSXXXXXPLPPXXXXXXXXPXXPLXPXXP 1053
P+ + PP P+ P P P P P
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +1
Query: 715 PRHXXPPSXPSXXXAXXPPXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPPP 867
P P P A P PP P P PPP +P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +1
Query: 697 PXXRXPPRHXXPPSXPSXXXAXXP--PXRXXXXHPPXPXXXPXXXPPPPPXXXAXLPP 864
P PPR PP P+ P PP P PP P + +PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -3
Query: 962 GGEXXEEVXSXRGXXGGXGGGGGGXXGGGXXXGGGXXAXXXGGGGG 825
GG + R G GGG GGG GG + G GGG
Sbjct: 422 GGAGMDPFDILRAYQAGGSFPGGGFPGGG-FPGGSYNSQGFGMGGG 466
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 757 AXXPPXRXXXXHPPXPXXXPXXXPPPPP 840
A PP PP P PPPPP
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.138 0.445
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,252
Number of Sequences: 5004
Number of extensions: 8331
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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