Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B12
         (913 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    31   5.8  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               31   5.8  
BC033084-1|AAH33084.1| 1164|Homo sapiens formin homology 2 domai...    31   5.8  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        31   5.8  
AY192154-1|AAO38757.1| 1164|Homo sapiens FHOS protein.                 31   5.8  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    31   5.8  
AF113615-1|AAD39906.1| 1164|Homo sapiens FH1/FH2 domain-containi...    31   5.8  
AB209584-1|BAD92821.1| 1017|Homo sapiens P127 variant protein.         31   5.8  
AB041046-1|BAD06250.1| 1164|Homo sapiens p127 protein.                 31   5.8  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +2

Query: 737 GXPXAPXXPXXGXXXKTPXX--PXXGEXPPXGXXXXXKPXXXPPXGPXXP 880
           G P  P  P  G     P    P  G+ PP       +P   PP GP  P
Sbjct: 245 GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP 294


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +2

Query: 737 GXPXAPXXPXXGXXXKTPXX--PXXGEXPPXGXXXXXKPXXXPPXGPXXP 880
           G P  P  P  G     P    P  G+ PP       +P   PP GP  P
Sbjct: 245 GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP 294


>BC033084-1|AAH33084.1| 1164|Homo sapiens formin homology 2 domain
            containing 1 protein.
          Length = 1164

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 188  RCSRAQVEALQEN*ESGTQRSRWINQSXSSYSRHKASKSLESRL 319
            RC++   E L EN     +RSR   +S  S ++H+ + +L +RL
Sbjct: 886  RCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 929


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +2

Query: 737 GXPXAPXXPXXGXXXKTPXX--PXXGEXPPXGXXXXXKPXXXPPXGPXXP 880
           G P  P  P  G     P    P  G+ PP       +P   PP GP  P
Sbjct: 282 GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP 331


>AY192154-1|AAO38757.1| 1164|Homo sapiens FHOS protein.
          Length = 1164

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 188  RCSRAQVEALQEN*ESGTQRSRWINQSXSSYSRHKASKSLESRL 319
            RC++   E L EN     +RSR   +S  S ++H+ + +L +RL
Sbjct: 886  RCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 929


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +2

Query: 737 GXPXAPXXPXXGXXXKTPXX--PXXGEXPPXGXXXXXKPXXXPPXGPXXP 880
           G P  P  P  G     P    P  G+ PP       +P   PP GP  P
Sbjct: 245 GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP 294


>AF113615-1|AAD39906.1| 1164|Homo sapiens FH1/FH2 domain-containing
            protein FHOS protein.
          Length = 1164

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 188  RCSRAQVEALQEN*ESGTQRSRWINQSXSSYSRHKASKSLESRL 319
            RC++   E L EN     +RSR   +S  S ++H+ + +L +RL
Sbjct: 886  RCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 929


>AB209584-1|BAD92821.1| 1017|Homo sapiens P127 variant protein.
          Length = 1017

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 188 RCSRAQVEALQEN*ESGTQRSRWINQSXSSYSRHKASKSLESRL 319
           RC++   E L EN     +RSR   +S  S ++H+ + +L +RL
Sbjct: 739 RCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 782


>AB041046-1|BAD06250.1| 1164|Homo sapiens p127 protein.
          Length = 1164

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 188  RCSRAQVEALQEN*ESGTQRSRWINQSXSSYSRHKASKSLESRL 319
            RC++   E L EN     +RSR   +S  S ++H+ + +L +RL
Sbjct: 886  RCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 929


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,252,284
Number of Sequences: 237096
Number of extensions: 1769051
Number of successful extensions: 3957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3891
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)