Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B11
         (1023 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.013
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.48 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.013
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +3

Query: 870 PPXXPPXPPPAAXXPXPPPXXGXAPXPPXPPPXGPXXGXPP 992
           P    P P P+       P  G  P P   PP G   G PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 498 PPPXGPPXAP 527
           PPP GPP AP
Sbjct: 46  PPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +1

Query: 514 RPXPPXPXPPPRPPXXPXPXPRGXXGGAXXGXXPRAP 624
           +P    P P P P   P    RG       G  P  P
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 849 PPPXXXXPPXXPPXPPPA 902
           P P    PP  PP  PP+
Sbjct: 40  PNPSQGPPPGGPPGAPPS 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 523 PPXPXPPPRPPXXPXP 570
           PP P PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 991  PPXPXPPPP 1017
            PP P PPPP
Sbjct: 338  PPKPAPPPP 346



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 988  PPPXPXPPPP 1017
            P P P PPPP
Sbjct: 339  PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 870 PPXXPPXPPPAAXXP 914
           P   PP PPP++  P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 511  GRPXPPXPXPPPRPPXXPXPXPRG 582
            GRP P  P   P     P P  RG
Sbjct: 1362 GRPVPERPERVPTVDLSPSPSDRG 1385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,007
Number of Sequences: 438
Number of extensions: 8006
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)