Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B10
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.73 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.73 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 351 HSSTTTARITHCDIYLITKLKFLVFK-PIYKVMCLLYIINIVSFNLEVNMNPLSI 190
           +S T T   +   + L+ K +F  +   IY   C+L I++ VSF L+ +  P  +
Sbjct: 220 NSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARV 274


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 351 HSSTTTARITHCDIYLITKLKFLVFK-PIYKVMCLLYIINIVSFNLEVNMNPLSI 190
           +S T T   +   + L+ K +F  +   IY   C+L I++ VSF L+ +  P  +
Sbjct: 220 NSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAVPARV 274


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 865 PXXPXPPPXPPPXXXP 912
           P  P PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 864 PPXXPPPPXPP 896
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 876  PPPPXPPP 899
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 361 RQTPFLYHHRPDNSLRY 311
           +Q+P+L +  PD   RY
Sbjct: 84  QQSPYLMYENPDEEKRY 100


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 421 TTSMHAVPPPSSGXSKQGYSTMSAI 495
           +T++ + PPP+ G S+    +MSA+
Sbjct: 373 STALMSQPPPNFGVSQVSPVSMSAL 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,812
Number of Sequences: 438
Number of extensions: 5917
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)