Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B07
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    35   0.014
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.39 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.4  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 114 MLAASAGVV--ELSADTSNQDLXEKLYNSILTGDYXSAVRQSLEYESQGKGSII 269
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 801 GCXGXXGXSWGGXGGXXQGGGGGGXXXG 718
           G  G  G S GG GG  +GG GGG   G
Sbjct: 142 GFRGGRGGSRGGFGGNSRGGFGGGSRGG 169



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 792 GXXGXSWGGXGGXXQGGGGGGXXXG 718
           G  G S GG GG  +GG GGG   G
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGG 177


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 239 FQALTDSTVVVAGEDAVVQFLLEVLV 162
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 237
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 162 NQDLXEKLYNSILTGDYXSAVRQSLE 239
           + DL + +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,596
Number of Sequences: 5004
Number of extensions: 30408
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)