Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B02
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.7  
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    26   6.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   8.3  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 103 VNIIVLCTADLCSENEIYVKCVQAHCGPRXVLREGLTY 216
           +N+I     D CS  +IY+ C   +C    VL++ + +
Sbjct: 450 INMIPRYNQDNCSAGDIYILCFSENCWLYSVLQKTIDH 487


>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 207 SFSEHVPWAAMCLDTFHVYFIFRAEVSCTEDDDVDER*H 91
           SF++ + W+A+ L      +  R+ + C +  ++DE  H
Sbjct: 8   SFTKTLRWSALVLGLGAGMYEHRSHIQCQKQKEIDENYH 46


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 67  AMSFSWIVVLAFVNIIVLCTADLCS 141
           AM + W++ + FV  +    A+LCS
Sbjct: 75  AMVWGWLIAMVFVQCVANGMAELCS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,998
Number of Sequences: 5004
Number of extensions: 27372
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)