Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B02
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    34   0.002
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    34   0.002

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 MPCPLVXQEYCKAGCLCKXGYLKXDSGXCVARXXC 319
           +P PL  +  C  GC+C+ GYL+     CV R  C
Sbjct: 58  VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 31.5 bits (68), Expect = 0.011
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 443 CXAGCVCXXGYLXXXSGXCVARXXC 517
           C  GCVC  GYL      CV R  C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 MPCPLVXQEYCKAGCLCKXGYLKXDSGXCVARXXC 319
           +P PL  +  C  GC+C+ GYL+     CV R  C
Sbjct: 58  VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 31.5 bits (68), Expect = 0.011
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 443 CXAGCVCXXGYLXXXSGXCVARXXC 517
           C  GCVC  GYL      CV R  C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,825
Number of Sequences: 438
Number of extensions: 2588
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)