Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B01
(1257 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 0.002
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.016
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.027
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.11
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.44
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 7.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = +1
Query: 706 PPXXXXXPPPPPXPPXP----QXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXTT 873
PP PPPPP P Q PP PPP P P T+
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 874 TPHXKQPXSXLPPXP 918
TP P S P P
Sbjct: 414 TPPVPTPPSLPPSAP 428
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/100 (25%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Frame = +1
Query: 685 PTTXXHPPPXXXXX-----PPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXP 849
P+T PPP P PPP P P +T+ PP P P+ P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 850 XQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
P + P PP P P P P
Sbjct: 430 SLPP--SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/76 (23%), Positives = 19/76 (25%)
Frame = +1
Query: 691 TXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXT 870
T P P PP P P PP L PP P P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 871 TTPHXKQPXSXLPPXP 918
P + P P
Sbjct: 472 AAPAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/81 (24%), Positives = 27/81 (33%)
Frame = +1
Query: 727 PPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXTTTPHXKQPXSXL 906
PPPPP + P + + + + PPPP P P + P P S
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL-PPQGRSAPPPPPPRS-- 368
Query: 907 PPXPXKTXXXPXSSXTXPXPP 969
P + SS PP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPP 389
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 685 PTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPP 816
P PPP PP PP P P + + T+ PP P
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSM-NPAINSTSKPPLP 293
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 702 PPPXXPXXXTXPAXPPXPXXXXXPXPHXXXQNHPPXPP 815
PPP + P PP P P + PP PP
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.016
Identities = 21/85 (24%), Positives = 24/85 (28%)
Frame = +1
Query: 685 PTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPX 864
P PP PP P PP PP P+ P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 865 XTTTPHXKQPXSXLPPXPXKTXXXP 939
+T P P + LPP P T P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 30.7 bits (66), Expect = 0.44
Identities = 24/112 (21%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPX--PPXPQXPPXLXHTTXXKTTXPPP 813
P P P P P P P P PP P+ + PP
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 814 PXXXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
P P P + P +P +PP P + P + + PP
Sbjct: 1182 PKPAAGVPPVPPP-----SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 30.3 bits (65), Expect = 0.58
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPX 819
P P P + P+T P P P P PP + + + P P
Sbjct: 1023 PVPLP-SADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 820 XXXXX-PTXXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
P+ P P +P +PP P + P + PP
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/92 (21%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Frame = +1
Query: 706 PPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPX----QXPXXTT 873
P P P PP P+ PP P P P P +
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 874 TPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
P +P PP P + P + PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 29.9 bits (64), Expect = 0.77
Identities = 27/112 (24%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPP--XPPXPQXPPXLXHTTXXKTTXPPP 813
P P P P P P P P PP P+ P + PP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK-PSVAAPPVPAPSGAPPV 1161
Query: 814 PXXXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
P P P P P K P + +PP P + P + PP
Sbjct: 1162 PKPSVAAP---PVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 28.3 bits (60), Expect = 2.4
Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Frame = +1
Query: 703 PPPXXXXXPPPPPX--PPXPQ----XPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPX 864
P P P PPP PP P+ PP +T P PT P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241
Query: 865 XTT-TPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPPHXT 978
++ P P S +P P SS P T
Sbjct: 1242 PSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPART 1280
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 4/112 (3%)
Frame = +1
Query: 646 PXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXX 825
P P P+ P P PP P P PP + P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP--SGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 826 XXXPTXXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXP----XSSXTXPXPP 969
P+ P + P +P PP P + P ++ P PP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.027
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 703 PPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPP 816
PPP PPPP PP P PP ++ P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +1
Query: 679 TXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPT 840
T P P P PPP P PP + PPPP P+
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +1
Query: 736 PPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPX 915
PP P PP + T PPPP P P + P P S P
Sbjct: 1690 PPVRPQSAAPPQMSAPT------PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSV 1743
Query: 916 P 918
P
Sbjct: 1744 P 1744
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.11
Identities = 27/116 (23%), Positives = 32/116 (27%), Gaps = 4/116 (3%)
Frame = +1
Query: 634 TXPXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPP- 810
T P P + + P PP PPP + PP PP
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
Query: 811 -PPXXXXXXPTXXPXQXPXXTTTP--HXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
PP P P P H S P P + P S+ P PP
Sbjct: 201 VPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIP-SASVPPVPP 255
Score = 31.5 bits (68), Expect = 0.25
Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Frame = +1
Query: 685 PTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPX 864
P + PP PP PP P PP + PP P P+ P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPP------PSPASAPPIPSKAPPIPSSLPPPAQP 177
Query: 865 XT---TTPHXKQPXSXLPPXPXKTXXXPXS 945
+ P S +PP P K P S
Sbjct: 178 AAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Score = 29.9 bits (64), Expect = 0.77
Identities = 23/94 (24%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Frame = +1
Query: 646 PXPXTXXTTXXTXPTTXXHPPPXXXXXPP-PPPXPPXP-QXPPXLXHTTXXKTTXPPPPX 819
P P + + P PPP PP P PP P PP K+ P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Query: 820 XXXXXPTXXPXQXPXXTTTP---HXKQPXSXLPP 912
P P + P +P S PP
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 32.3 bits (70), Expect = 0.14
Identities = 22/95 (23%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Frame = +1
Query: 646 PXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPP---- 813
P P P H P PPP P PP H + PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 814 PXXXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPXP 918
P P P +P +PP P
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 30.3 bits (65), Expect = 0.58
Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Frame = +1
Query: 700 HPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPP----PXXXXXXPTXXPXQXPXX 867
H P PPP P PP H + PPP P P
Sbjct: 200 HHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 259
Query: 868 TTTPHXKQPXSXLPPXP 918
P +P +PP P
Sbjct: 260 PPPPMHHEPGEHMPPPP 276
Score = 29.9 bits (64), Expect = 0.77
Identities = 23/93 (24%), Positives = 26/93 (27%)
Frame = +1
Query: 646 PXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPXXX 825
P P P H P PPP P PP H + PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE-HMPPPPMHH 318
Query: 826 XXXPTXXPXQXPXXTTTPHXKQPXSXLPPXPXK 924
P P +P +PP P K
Sbjct: 319 EPGEHMPP--------PPMHHEPGEHMPPPPFK 343
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 619 QKXXXTXPXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPP 750
QK P P P PP PPPPP PP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 705 PPXXPXXXTXPAXPPXPXXXXXPXPHXXXQNHPPXPPXXPXXXTXXXPXPXP 860
PP P P P P P P PP PP P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP---IMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPP 750
P P P P PP PPPPP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +1
Query: 703 PPPXXXXXPPPPPXP-PXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXP 861
PPP P P P P P P P + PPPP P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMG----GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/77 (24%), Positives = 20/77 (25%)
Frame = +1
Query: 739 PXPPXPQXPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPXP 918
P P P + PPPP PT P P P P PP P
Sbjct: 710 PSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP----PPPP 765
Query: 919 XKTXXXPXSSXTXPXPP 969
P PP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 3.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 709 PXXXXXPPPPPXPPXP 756
P P PPP PP P
Sbjct: 899 PTIITHPTPPPPPPLP 914
Score = 22.2 bits (45), Expect(2) = 3.7
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = +1
Query: 736 PPXPPXPQXPPXLXHTTXXKTTXP 807
P PP P PP L K P
Sbjct: 942 PAFPPPPPPPPPLVSAAGGKFVSP 965
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 4.1
Identities = 23/115 (20%), Positives = 31/115 (26%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXPQXPPXLXHTTXXKTTXPPPPX 819
P P T T + P PP P P +T +T PPP
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
Query: 820 XXXXXPTXXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPPHXTXT 984
+ P + T P + P P S+ + PP T
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 376
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 5.4
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Frame = +1
Query: 709 PXXXXXPPPPPXPPXPQ------XPPXLXHTTXXKTTXPPPPXXXXXXPTXXPXQXPXXT 870
P PPPPP PP + P +++ + PP P P
Sbjct: 184 PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243
Query: 871 TTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXPP 969
T + + P P + S P PP
Sbjct: 244 PTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 706 PPXXXXXPPPPPXPPXPQXPP 768
PP PPPPP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP 25
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 685 PTTXXHPPPXXXXXPPPPPXPPXP 756
P PPP PP P PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 7.2
Identities = 27/113 (23%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Frame = +1
Query: 640 PXPXPXTXXTTXXTXPTTXXHPPPXXXXXPPPPPXPPXP---QXPPXLXHTTXXKTTXPP 810
P P P T T P P P P P T +T PP
Sbjct: 850 PLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPP 909
Query: 811 PPXXXXXXPT-XXPXQXPXXTTTPHXKQPXSXLPPXPXKTXXXPXSSXTXPXP 966
PP PT P + P K + PP T P + P P
Sbjct: 910 PP------PTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNP 956
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,813
Number of Sequences: 5004
Number of extensions: 19104
Number of successful extensions: 321
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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