Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A19
         (1055 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    29   0.053
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 29.5 bits (63), Expect = 0.053
 Identities = 23/88 (26%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
 Frame = +2

Query: 635 PPXPXHARXPXPXXPPPPXXX-FXPRSXPPXPPLXXXTPXLRPTXRXXXXXXXPXPPPPX 811
           PP P   R   P   P      + P+  PP P L                   P P PP 
Sbjct: 55  PPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAES-EAEPGNNRPVYIPQPRPPH 113

Query: 812 PXXTRXPPXPPXXXTXXHIXXRXXXPHP 895
           P   R P   P      +I  +   PHP
Sbjct: 114 PRLRREPEAEPGNNRPVYI-PQPRPPHP 140



 Score = 28.3 bits (60), Expect = 0.12
 Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
 Frame = +2

Query: 635 PPXPXHARXPXPXXPPPPXXX-FXPRSXPPXPPLXXXTPXLRPTXRXXXXXXXPXPPPPX 811
           PP P   R       P      + P+  PP P L    P   P          P P PP 
Sbjct: 83  PPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRRE-PEAEPGNNRPVYI--PQPRPPH 139

Query: 812 PXXTRXPPXPPXXXTXXHIXXRXXXPHP 895
           P   R P   P      +I  +   PHP
Sbjct: 140 PRLRREPEAEPGNNRPVYI-PQPRPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 663 PXRPXPPPXPPXS 701
           P +P PPP PP S
Sbjct: 338 PPKPAPPPPPPSS 350


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 669  RPXPPPXPPXSXPA 710
            +P PPP PP S  A
Sbjct: 1354 QPPPPPPPPSSGQA 1367


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 639 PXXXTPAXPXRPXPPPXPPXSXPA 710
           P   +P  P +  PP  PP + P+
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,689
Number of Sequences: 438
Number of extensions: 8965
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)