Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A18
         (1411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 29/127 (22%), Positives = 33/127 (25%)
 Frame = +3

Query: 408 PPPPXXXGRPPXRPAPXXGGGXRAAPXXPPRXRRXXXXXRXAXGXHPRXXXXXAXWXAXP 587
           PPPP        +P P       + P  PP         R A    P            P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPP----PAIPGRSAPALPPLGNASRTSTPPVP 418

Query: 588 HXPPXXPXXXPXVXXARPTRLGRAXXGXAXXXRSAXPXXXAXXAXXXAPTXXRPPXXXSP 767
             P   P   P +  + P  L            SA P      A   A     P     P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA-PIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 768 PXPXPPP 788
           P P P P
Sbjct: 478 PAPAPAP 484


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 408 PPPPXXXGRPPXRPAPXXGGGXRAAPXXPP 497
           PP P   G PP  P P   G     P  PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 732 PTXXRPPXXXSPPXPXPPPXRXGXPPXXAXPP 827
           P     P    PP P PPP   G  P    PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 408 PPPPXXXGRPPXRPAPXXGGGXRAAPXXPP 497
           PPP    G PP  P P    G    P  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +3

Query: 729  APTXXRPPXXXSPPXPXPPPXRXGXPPXXAXPP 827
            APT   PP    PP P  PP   G PP    PP
Sbjct: 1704 APTPPPPPMSV-PPPPSAPPMPAG-PPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/77 (27%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
 Frame = +2

Query: 341  PPXAXXXAAXXPXXXPXGGXARPPXPXPPXXAPRPPGXXVRXGXSRXAXXXPXXAAXXXG 520
            PP      A  P   P G    PP P P   AP  P         + +   P   A   G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGA---PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177

Query: 521  XP----XRXGAPPPXXP 559
             P       G PP   P
Sbjct: 1178 IPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,035
Number of Sequences: 5004
Number of extensions: 16681
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 782948132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)