Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A16
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.7  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 913 GXGXGGXGGGXGGFX*WGPXG 851
           G G GG GGG GGF   GP G
Sbjct: 241 GGGPGGFGGGLGGFG-GGPGG 260



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 913 GXGXGGXGGGXGGFX*WGPXG 851
           G G GG GGG GGF   GP G
Sbjct: 248 GGGLGGFGGGPGGFG-GGPGG 267



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 907 GXGGXGGGXGGFX*WGPXG 851
           G GG GGG GGF   GP G
Sbjct: 222 GHGGFGGGPGGFE-GGPGG 239


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 861 PHXXNPPXPPPXPP 902
           P   NPP PPP PP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 915 GGAXXGVXGGGEGGXXDGAXXG 850
           GGA  G+ GG  GG   GA  G
Sbjct: 616 GGAPGGMPGGAPGGAPGGADNG 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,528
Number of Sequences: 5004
Number of extensions: 16629
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)