Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A13
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.23 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 829 PPXPPPPPPXPXPXSP 876
           PP P PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 805 SXTPXXXXPPXPPPPPPXP 861
           S TP    PP PPP    P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 829 PPXPPPPPPXPXPXS 873
           P  PPPPP    P S
Sbjct: 341 PAPPPPPPSSSGPDS 355



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 627 PPKPXPPXP 653
           PPKP PP P
Sbjct: 338 PPKPAPPPP 346



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 621 PXPPKPXPPXPXSFXP 668
           P  P P PP P S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 829  PPXPPPPP 852
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 832  PXPPPPPP 855
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 838  PPPPPPXP 861
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 832  PXPPPPPP 855
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 205 YCTKPTPNDPAXXCTA 252
           YC   TPN P+  C A
Sbjct: 220 YCYNLTPNQPSAQCEA 235


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
 Frame = +1

Query: 796 HPQSXTPXXXXPPXPPP-PPPXPXPXSP 876
           H     P    PP P   PPP   P +P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 866 GXGXGGGGGGXG 831
           G   GGGGGG G
Sbjct: 42  GANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,534
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)