Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_A11
(919 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 26 0.55
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 0.69
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 25 1.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.7
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 2.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.9
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 25.8 bits (54), Expect = 0.55
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 368 LTGMYVHNHKTVNN-SLHGXMLWREXEISRETDXP 469
LT +Y K V SLHG +LWRE T P
Sbjct: 287 LTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNP 321
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 838 PPPPXPPPXXPPPXXXXP 891
PP P PPP PPP P
Sbjct: 338 PPKPAPPP--PPPSSSGP 353
Score = 22.6 bits (46), Expect = 5.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 740 PPSXXXPPPPP 772
PP PPPPP
Sbjct: 338 PPKPAPPPPPP 348
Score = 22.6 bits (46), Expect = 5.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 889 PXXPPPPPPP 918
P P PPPPP
Sbjct: 338 PPKPAPPPPP 347
Score = 22.6 bits (46), Expect = 5.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 889 PXXPPPPPPP 918
P PPPPPP
Sbjct: 339 PKPAPPPPPP 348
Score = 22.2 bits (45), Expect(2) = 0.69
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 744 PPXXXPXPPPP 776
PP P PPPP
Sbjct: 338 PPKPAPPPPPP 348
Score = 21.4 bits (43), Expect(2) = 0.69
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3
Query: 837 PPXPPPPPXXXXP 875
P PPPPP P
Sbjct: 341 PAPPPPPPSSSGP 353
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 24.6 bits (51), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 916 GGGXXGGGXGXXXXGXXXXGGGGGXG 839
GG G G G GGGGG G
Sbjct: 28 GGVVTGASGGSIVVGANNGGGGGGLG 53
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 731 RXXPPSXXXPPPPPPP 778
R P S PPPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.8 bits (49), Expect = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 758 PPPPPPP 778
PPPPPPP
Sbjct: 1355 PPPPPPP 1361
Score = 23.8 bits (49), Expect = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 898 PPPPPPP 918
PPPPPPP
Sbjct: 1355 PPPPPPP 1361
Score = 23.8 bits (49), Expect = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 758 PPPPPPP 778
PPPPPPP
Sbjct: 1356 PPPPPPP 1362
Score = 23.8 bits (49), Expect = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 898 PPPPPPP 918
PPPPPPP
Sbjct: 1356 PPPPPPP 1362
Score = 23.4 bits (48), Expect = 2.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 837 PPXPPPPP 860
PP PPPPP
Sbjct: 1355 PPPPPPPP 1362
Score = 23.4 bits (48), Expect = 2.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 838 PPPPXPPP 861
PPPP PPP
Sbjct: 1355 PPPPPPPP 1362
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 3.9
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Frame = +1
Query: 841 PPPXPPPXXPP--PXXXXPXXPPPPPPP 918
P P P P P P P P PPP
Sbjct: 21 PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48
Score = 22.2 bits (45), Expect = 6.8
Identities = 9/26 (34%), Positives = 9/26 (34%)
Frame = +3
Query: 837 PPXPPPPPXXXXPXXXXPXPPPXXPP 914
P P P P PPP PP
Sbjct: 27 PHQSPQAPQRGSPPNPSQGPPPGGPP 52
Score = 21.8 bits (44), Expect = 9.0
Identities = 9/26 (34%), Positives = 9/26 (34%)
Frame = +3
Query: 840 PXPPPPPXXXXPXXXXPXPPPXXPPP 917
P P P P P P PPP
Sbjct: 23 PQPSPHQSPQAPQRGSPPNPSQGPPP 48
Score = 21.8 bits (44), Expect = 9.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 841 PPPXPPPXXPP 873
PPP PP PP
Sbjct: 46 PPPGGPPGAPP 56
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,059
Number of Sequences: 438
Number of extensions: 10265
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -