Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A09
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.072
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect(3) = 0.072
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 594 FXXPPPPPPP 623
           F  PPPPPPP
Sbjct: 944 FPPPPPPPPP 953



 Score = 22.6 bits (46), Expect(3) = 0.072
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 606 PPPPPPXXXXXXXXGG 653
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 21.4 bits (43), Expect(3) = 0.072
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +3

Query: 525 PPXVFXXXPPPPPXXKKKXXXXFFXXP 605
           P  +    PPPPP    K     F  P
Sbjct: 899 PTIITHPTPPPPPPLPVKTSLNTFSHP 925


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 24/80 (30%), Positives = 24/80 (30%)
 Frame = -2

Query: 785 GGGXXXXXXXXGGPPPPPPXXXGXXGXGGXXXXXKKXXXXXXXXPPXXXXXXXXXGGGGG 606
           GGG        GGPPP P    G  G GG                P          GGG 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG--EGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244

Query: 605 GXXKKXXXXFFFXXGGXGGG 546
           G        F    GG GGG
Sbjct: 245 GGFGGGLGGFGGGPGGFGGG 264


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 525 PPXVFXXXPPPPPXXKKKXXXXFFXXPPPPPPP 623
           PP V    P P P             PPPPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +3

Query: 525 PPXVFXXXPPPPPXXKKKXXXXFFXXPPPPPPP 623
           PP      PPPPP             PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG--PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 752 GGPPPPPPXXXGXXGXG 702
           GGPPPPPP   G  G G
Sbjct: 759 GGPPPPPP-PPGVAGAG 774


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 549 PPPPPXXKKKXXXXFFXXPPPPPPP 623
           PPPPP  +          PPPPPPP
Sbjct: 12  PPPPPGFEPPSQ------PPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
 Frame = +3

Query: 549 PPPPPXXKKKXXXXF------FXXPPPPPPP 623
           PPPPP  + +              PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,809
Number of Sequences: 5004
Number of extensions: 30915
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)