Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A04
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    99   4e-22

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =   99 bits (238), Expect = 4e-22
 Identities = 40/93 (43%), Positives = 60/93 (64%)
 Frame = +1

Query: 370 RTSIFAIFLYLCSGLGIXAGAPXLWAHXSYKARLPLRXLLTIFNTIAFXDAVXDWARDHR 549
           +T IFAI  Y  SGLGI AG   LW+H +YKA+ PL   L      AF  ++  W+RDHR
Sbjct: 89  KTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHR 148

Query: 550 IHXKYSETDAXPHXATRGFFFSHIGWLLLRXHP 648
            H +Y++TD  P+   +GF+++H+GW+++  +P
Sbjct: 149 AHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,637,550
Number of Sequences: 5004
Number of extensions: 72678
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)