Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A03
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.70 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 235 QPSGGAPSRARAPPCWTPLTKQNIPPKPESKLAPLAPYVSPREQTRARVL 384
           QPS GAP    +P       ++  PP P     P  P  +P  Q  ++++
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMM 64


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 307 PPKPESKLAPLAPY 348
           PPKP++K  P +PY
Sbjct: 250 PPKPQTKTKPTSPY 263


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 469 LGEQHVHVVARRAPEGPPR 413
           +    +H  AR  P GPPR
Sbjct: 1   MSNDSIHWEARYLPAGPPR 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,339
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)