Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_A02
(923 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 49 5e-06
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 49 5e-06
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 49 5e-06
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 49 5e-06
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 49 5e-06
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 49 5e-06
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 49 5e-06
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 46 6e-05
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 30 3.0
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 29 6.9
01_07_0075 + 40908875-40909069,40909147-40909215,40909363-409094... 28 9.1
01_06_0639 + 30772804-30772904,30773386-30775675 28 9.1
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 84 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 99
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 56 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 71
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 66 MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 176
MVNVPK ++TY +QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 84 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 99
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 56 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 71
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 66 MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 176
MVNVPK ++TY +QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 83 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 40 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 98
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 84 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 41 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 99
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 49.2 bits (112), Expect = 5e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +2
Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
P ++ K +K+ L+C C SQ +KRCKHFE+GGD K KG
Sbjct: 56 PVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 KNVNATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLR 273
KN K+T + T K + + +RRYDRKQ GYGGQ+KP+F IVL+
Sbjct: 13 KNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLK 71
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 66 MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 176
MVNVPK ++TY +QYKK K+ +AQG
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQG 39
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 45.6 bits (103), Expect = 6e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 248 KPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKG 364
K +K+ L+C C SQ +KRCKHF++GGD K KG
Sbjct: 20 KTTKKIVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 85 SAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRY 189
S+GRTA++ + R+H T RKG LPR ++
Sbjct: 99 SSGRTARDAAVAQQERHHDTIKRRKG-LPRWTEKF 132
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 407 QWSYLLEAFKIGSSVPFSSXHHQAQSACISSMQPVISPXNQH 282
+W + E F+ G+ S H + S+C P P +QH
Sbjct: 138 RWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQH 179
>01_07_0075 +
40908875-40909069,40909147-40909215,40909363-40909461,
40909999-40910078,40910162-40910444,40910557-40910580,
40911039-40911700,40912037-40912121,40912203-40912254,
40912336-40912385,40912450-40912497,40912590-40912766
Length = 607
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 205 PAVYDHNVFXPWAACLSLDFLYCDTLCT------LWHLHFLQYVL 89
P + D+N F AA LD T+CT LW +FLQY L
Sbjct: 45 PKLNDNNAFRVLAAASFLDLQDLCTICTDFIISELWTSNFLQYQL 89
>01_06_0639 + 30772804-30772904,30773386-30775675
Length = 796
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +2
Query: 179 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKR 358
ED ++ +S VS + + P+R + ++ C DC ++ K + D KR
Sbjct: 722 EDALLAHSERLAVSYGLITSAARSPIRVIKNLRSCGDCHTALKIISKLVGRLIIARDAKR 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,242
Number of Sequences: 37544
Number of extensions: 234014
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -