Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A02
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    59   4e-09
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    59   4e-09
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AY313178-1|AAP79303.1|  569|Caenorhabditis elegans myotubularin-...    28   8.2  
AC024770-4|AAT68891.1|  521|Caenorhabditis elegans Mtm (myotubul...    28   8.2  
AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm (myotubul...    28   8.2  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +2

Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKGQMIQF 379
           P  +++ K  +K+   +EC +C  + Q+ +KRCKHFELGG  K +GQ+IQF
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 27/61 (44%), Positives = 35/61 (57%)
 Frame = +1

Query: 91  GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 270
           G+  K+ N  K T+Y   K  ++    + RRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 271 R 273
           R
Sbjct: 70  R 70



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 66  MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 176
           MVNVPK RRT+             +QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +2

Query: 227 PSSKRRQKPLRKLCSVLECADCXVRSQVALKRCKHFELGGDXKRKGQMIQF 379
           P  +++ K  +K+   +EC +C  + Q+ +KRCKHFELGG  K +GQ+IQF
Sbjct: 55  PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 27/61 (44%), Positives = 35/61 (57%)
 Frame = +1

Query: 91  GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 270
           G+  K+ N  K T+Y   K  ++    + RRRYDRKQ G+GGQ+KPIF         IVL
Sbjct: 14  GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69

Query: 271 R 273
           R
Sbjct: 70  R 70



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 66  MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 176
           MVNVPK RRT+             +QYKK KE   AQG
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 199 VYDHNVFXPWA-ACLSLDFLYCDTLCTLWHL 110
           +YDH+ +  W    +S+ F++C   C +W +
Sbjct: 27  IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57


>AY313178-1|AAP79303.1|  569|Caenorhabditis elegans
           myotubularin-related protein MTM-9 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 383 FKIGSSVP-FSSXHHQAQSACISSMQPVISPXNQHTQERSTI 261
           F+ G   P  S  H + +S  +   QP+I P N+  +E  TI
Sbjct: 190 FREGGRFPVLSYFHKETKSPLVRCSQPLIGPTNRRCREDETI 231


>AC024770-4|AAT68891.1|  521|Caenorhabditis elegans Mtm
           (myotubularin) family protein9, isoform b protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 383 FKIGSSVP-FSSXHHQAQSACISSMQPVISPXNQHTQERSTI 261
           F+ G   P  S  H + +S  +   QP+I P N+  +E  TI
Sbjct: 142 FREGGRFPVLSYFHKETKSPLVRCSQPLIGPTNRRCREDETI 183


>AC024770-3|AAK84604.1|  569|Caenorhabditis elegans Mtm
           (myotubularin) family protein9, isoform a protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 383 FKIGSSVP-FSSXHHQAQSACISSMQPVISPXNQHTQERSTI 261
           F+ G   P  S  H + +S  +   QP+I P N+  +E  TI
Sbjct: 190 FREGGRFPVLSYFHKETKSPLVRCSQPLIGPTNRRCREDETI 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,851
Number of Sequences: 27780
Number of extensions: 198912
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)