Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_A01
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    63   5e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    32   0.13 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    31   0.17 
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    29   0.69 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 37/99 (37%), Positives = 48/99 (48%)
 Frame = +3

Query: 174 KLPRLVVDNGSGMCKARFXXR*CSSRRVPLDRGKAPPSGX*WSVWDRRTLM*EMXHRAKX 353
           ++  LV+DNGSGMCKA F          P   G+    G    +  + + + +     + 
Sbjct: 4   EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRG 63

Query: 354 VS*PSNTPIXHXIVTXWDDMEXIXHXTXYXXLRVAPEEH 470
           +      PI H IV  WDDME I H T Y  LRVAPEEH
Sbjct: 64  IL-TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 26/33 (78%), Positives = 27/33 (81%)
 Frame = +2

Query: 278 PAIRXVMVGMGQKDSYVGDXAQSKXGILTLKYP 376
           P    +MVGMGQKDSYVGD AQSK GILTLKYP
Sbjct: 38  PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYP 70


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 217 RPGFXXDDAPRAVFPSIVGRPRHQ 288
           + GF  DD P+ +FP+ VGR +H+
Sbjct: 22  KAGFAGDDIPKCLFPTCVGRIKHE 45



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 293 VMVGMGQKDSYVGDXAQSKXGILTLKYP 376
           VM    QKD +VG  AQ+  G+L ++ P
Sbjct: 47  VMPSSIQKDMFVGSEAQNLRGLLKIQRP 74


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 375 PIXHXIVTXWDDMEXIXHXTXYXXLRVAPEEH 470
           PI H  +  WD ME     + +  LR  PE+H
Sbjct: 93  PIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 GFXXDDAPRAVFPSIVGRP 279
           G+  D+ PR  FPSIVGRP
Sbjct: 18  GYAKDNFPRFQFPSIVGRP 36


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 853 GHXLGXREXKXGGAGGXXKXGGGXGGXGXSGG 758
           GH  G      GG+GG     GG GG G  GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 641  PPXXXPHPRPXPHESDTXTPPPXX-PXPPHLXPXPSXP 751
            PP       P    + T  PPP   P PP   P P+ P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 718 SPAPXPXPLXSXXYPPTXXXPPXPHLVXXXPPP 816
           +PAP P P  +         PP P +    PPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,955
Number of Sequences: 5004
Number of extensions: 38833
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)