Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P24
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    42   1e-04
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    36   0.006
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    36   0.006
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    35   0.019
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    33   0.043
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    33   0.043
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    33   0.043
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    32   0.099
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    30   0.53 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    29   0.92 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   4.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   4.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   4.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   4.9  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
 Frame = +3

Query: 24  LGNSLKILSLATEAQRARVNAF*IMAADQVFHSRSLGIPSEGVKDQYA-DGKAAKTWNKF 200
           L N L ++S   E ++ ++N       DQ+  +     P +   D Y  +  A    +  
Sbjct: 179 LQNQL-LISQLEEIRKDKMNELTSQTTDQLSVT-----PKKADNDSYYFESYAGNDIHFL 232

Query: 201 IGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGF-KVVSVDASD 365
           + + + RT+ Y+DF+         KTVLD  CGTGI SM     G  KV +VD SD
Sbjct: 233 MLNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSD 288


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 252 LLKNNGCKTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKAR 395
           LL   G   +LD  CG+GI + +  ++G  VV +D S  ML  AL+++
Sbjct: 42  LLDAEGPSFILDIGCGSGISTQIGESQGHVVVGMDISPSMLSVALESQ 89


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +3

Query: 180 AKTWNKFIGDS---NQRTQNYKDFLIGLLKNNGC---KTVLDAACGTGIDSMMLVNEGFK 341
           AKTW  + G S   +       DF+  + +   C   K +LD  CG GI S  +   G  
Sbjct: 42  AKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGAS 101

Query: 342 VVSVDASDKMLKHALK 389
           V +VDAS   ++ A K
Sbjct: 102 VTAVDASPMAIEVAKK 117


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 153 KDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNE 332
           KD Y D  +    ++ +   + RT +Y+D ++        K VLD  CGTGI SM     
Sbjct: 16  KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75

Query: 333 GFK-VVSVDASD 365
           G K V  VD S+
Sbjct: 76  GAKHVYGVDMSE 87


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 273 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 425
           + VLDA C    ++  L + G+KVV +D S++ +  A+     ++ N  ++
Sbjct: 11  ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 273 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 425
           + VLDA C    ++  L + G+KVV +D S++ +  A+     ++ N  ++
Sbjct: 11  ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 273 KTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYD 425
           + VLDA C    ++  L + G+KVV +D S++ +  A+     ++ N  ++
Sbjct: 11  ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEKSNVNFN 61


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 279 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 383
           +LD  CG G+ +  LV++  +VV +DAS  M+K A
Sbjct: 37  LLDLGCGDGVLTNELVSQCRRVVGIDASPDMIKAA 71


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 276 TVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPK 419
           ++LD ACGTG+ S  L     ++V +D S  M+      ++ K   PK
Sbjct: 80  SILDFACGTGLISQHLFPYCKQIVGIDVSQDMV-DVYNEKFRKMNIPK 126


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 273 KTVLDAACGTGI-DSMMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEAN 449
           + VL+   G GI D+ +   E    V ++    +LKH  K  W  R+N      ++ E  
Sbjct: 187 RRVLNVGFGLGIIDTFLQEKEPSLHVIIEPHPDVLKHMRKNGWMDRENV-----IVYETT 241

Query: 450 WETLPQDI 473
           WE    DI
Sbjct: 242 WENAINDI 249


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 457 VSQLASSITQSSYLGFFLFSQRALRACFNILSEASTDTTLNPSFTSIMESIPVPQAASRT 278
           V QL +S+  +S +G FL S  + R CF   SE++    +      +      P A+S T
Sbjct: 122 VRQLHASLEDASSVGLFLLSLASERVCF---SESANSQEIESIDLGLGSQFGYPIASSNT 178


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 315 MMLVNEGFKVVSVDASDKMLKHALKARWEKRKNPKYDDWVIEEANWETLPQDIETFLPE 491
           + LVN   ++ SV + ++ LK+ L    EKRK  KY+     EA   T+  D+  +  E
Sbjct: 521 LQLVNSSTELESVKSENEKLKNELVLEIEKRK--KYE---TNEAKITTVATDLSQYYRE 574


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 608 GFRHFAKLLRHSFCILWSPYSSNKWAXEFPRHM 510
           GF HF K     FCI    Y++ K   EF RH+
Sbjct: 460 GFEHFKKNSFEQFCI---NYANEKLQQEFYRHV 489


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 608 GFRHFAKLLRHSFCILWSPYSSNKWAXEFPRHM 510
           GF HF K     FCI    Y++ K   EF +H+
Sbjct: 442 GFEHFEKNSMEQFCI---NYANEKLQQEFNKHV 471


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +3

Query: 234 KDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-FKVVSVDASDK-MLKHALKARWEK 404
           K+F+I  LK+NG  T++   CG G + +  + +    V  ++AS++ ML+   +AR +K
Sbjct: 805 KEFMISTLKHNGYITLM---CGDGTNDVGALKQAHVGVALLNASEEDMLEMQERARNQK 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,485,168
Number of Sequences: 5004
Number of extensions: 72072
Number of successful extensions: 221
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)