Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P22
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    74   2e-14
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.7  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.2  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 36/83 (43%), Positives = 47/83 (56%)
 Frame = +1

Query: 406 VDLFGSGXXXXXXXXXXXXXXXLKAYADXKSKKPXLIAKSSILXDVKPWDDETXMKXMXN 585
           +DLFGS                 + Y   K+ KP  + KS +  DVKPWDDET M  +  
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEK 149

Query: 586 QVRTIEMEGLLWGASKXVPVGYG 654
            VR+I+M+GL+WG SK VPVG+G
Sbjct: 150 AVRSIQMDGLVWGLSKLVPVGFG 172



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 147 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASY 299
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATY 63


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 147  LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 305
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 285 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*XPWAVLTSPT 118
           +Y +VV G G  P  C +   L  QLE     E +    F + ++      P A L S  
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367

Query: 117 AIVSFS 100
            I SFS
Sbjct: 368 RIKSFS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,346
Number of Sequences: 5004
Number of extensions: 44228
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)