Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P21
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    77   4e-15
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.099
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.099
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.13 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.93 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.6  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   3.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   6.5  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   8.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +3

Query: 258 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTA 425
           R+  + + IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA
Sbjct: 32  RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTA 87



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 233 NPLFEKRPKNFAIGQ 277
           NPLF  RP++F IGQ
Sbjct: 24  NPLFVSRPRSFGIGQ 38


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
 Frame = +3

Query: 714 PXPPPXXPLXPXXHPPXAXP--PXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXP 887
           P PP   P  P   PP A P  P   P      P +P            PP P   P  P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 888 XA 893
            A
Sbjct: 478 PA 479



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
 Frame = +3

Query: 720 PPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXP-PXPXA 893
           PP   P  P   P  A      P      PP P       P     P P   P P P A
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 723 PPXXPLXPXXHPPXAXPPXKXPXXGXXXPPS 815
           PP  P  P   PP   P    P      PPS
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPS 260



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = +3

Query: 714 PXPPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXP 887
           P  PP         PP   PP   P      PPS   S         PP P + P  P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG-APAAPPLPPSAPIAP 457



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/58 (27%), Positives = 18/58 (31%)
 Frame = +3

Query: 720 PPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXPXA 893
           P P  P  P   PP + PP   P      P +P            P      PP P A
Sbjct: 416 PVPTPPSLPPSAPP-SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 714 PXPPPXXPLXPXXHP-PXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXP 866
           P PPP   + P   P P   PP      G   PP P       P    PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
 Frame = +3

Query: 714 PXPPPXXPLXPXXH-PPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXP 878
           P P P  P  P    PP   PP      G   PP P  +          P P   P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
 Frame = +3

Query: 714  PXPPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRS-XXXXPXXXXP--PXPXTXPPX 884
            P P P     P   P    PP   P  G    P P  +     P    P  P P T PP 
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219

Query: 885  P 887
            P
Sbjct: 1220 P 1220



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = +3

Query: 714  PXPPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXP 887
            P P P     P   P  A PP   P      PP P  S    P     P P   PP P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGA---PPVPKPSVAAPPV----PVPSGAPPVP 1143



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
 Frame = +3

Query: 714  PXPPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRS-XXXXPXXXXPPXP---XTXPP 881
            P P P   + P   PP   PP   P  G    P P  +     P    PP P      PP
Sbjct: 1180 PVPKPAAGVPPVP-PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238

Query: 882  XP 887
             P
Sbjct: 1239 VP 1240



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = +3

Query: 714  PXPPPXXPLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXP 887
            P P P     P   P  A PP   P  G   PP P  +    P     P P   PP P
Sbjct: 1151 PVPAPSGA-PPVPKPSVAAPPVPAPSSG--IPPVPKPAAGVPPV----PPPSEAPPVP 1201


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
 Frame = +3

Query: 714 PXPPPXXPLXPXXHPPXAXP-PXKXPXXGXXXPPSPXRSXXXXPXXXXPPXPXTXPPXP 887
           P   P  P  P   P  A P P K P      PP    +         P  P   PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/64 (28%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
 Frame = +1

Query: 721 PPPXAPCXPXXTXPXPXXXXNXPXXXXPXPLLPXXXXXXXXXXXSPXXXPXXP-XXPXPP 897
           PP  AP  P    P P      P    P P              SP   P  P   P  P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 898 PXXP 909
           P  P
Sbjct: 199 PKVP 202


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = -2

Query: 886 GXGGXVXGXGGXXXXGXXXXXRLGEGGXXXPXXGXLXGGXAXGGXWXGXKGXXGGGXG 713
           G GG   G GG    G       G GG      G   GG    G   G +G   GG G
Sbjct: 10  GRGGSRGGRGGFN--GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 406 HWTRLQPKGLFKILEKYRPET 468
           HWTR+Q   + KIL+K  PE+
Sbjct: 99  HWTRIQGSEMCKILDKKCPES 119


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
 Frame = +3

Query: 735  PLXPXXHPPXAXPPXKXPXXGXXXPPSPXRSXXXXP-XXXXPPXPXTXPPXP 887
            P  P   PP        P      PP P  S    P     P  P + PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  ILLFCFGHFRRKFGIRFRSRIFSW 110
           +L  C+G   R+ G+++ S I SW
Sbjct: 22  VLFLCYGKSSRELGVKWNSDIRSW 45


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 PHPAPEGCTSASSESAPSDQPIYPDTGQDYSLRA 433
           PHP      SA S ++P   P+ P T +DY   A
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDYPFSA 386


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 592 NQLGDCXCXRIGWCWASL 539
           N L  C C R+ W W+++
Sbjct: 215 NLLFSCCCARVSWAWSTV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,224
Number of Sequences: 5004
Number of extensions: 41446
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)