Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P17
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   4.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   8.2  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -1

Query: 268 HATPDFVQIPSTSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVTEQPTPKTRNNY*FKPHF 89
           H++ D    PS+     P  +   + ++RL   +P   +E+   +  P    +   +P+ 
Sbjct: 421 HSSQDRQSPPSSPLKDVPSQINPFSPSLRLKGGSPITKREIEFCRDLPNRPTSS--EPNQ 478

Query: 88  TNTFYEDKRIKYDSNLKEFPI 26
            +T    KR+KY  NL ++ I
Sbjct: 479 GDTRKAGKRLKYSRNLDDYHI 499


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 211 DMPRGTAAMRLPFTTPRRSKEVVTEQPTP 125
           D+   TAA +L FT PRR++  + +   P
Sbjct: 58  DISTATAAEKLQFTVPRRARFEINDPRNP 86


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 402 LWYGLLGTATQEGVASGVRCTALLKEPSTSLPAMRRT*WPAYSS 271
           +W  +  TA + G+A      AL  E + S P +  T W  YS+
Sbjct: 459 IWISVKKTALKIGMALEAHTHALTSEDADSEPVLFITKWVDYSN 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,266
Number of Sequences: 5004
Number of extensions: 74215
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)