Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_P17
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0655 + 30668706-30668849,30669043-30669471 36 0.033
01_01_0820 - 6395150-6395769,6395865-6396294 31 1.2
03_05_0141 - 21210176-21212140 31 1.6
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 30 2.1
04_03_0348 + 14735581-14737071 29 3.7
02_01_0302 - 2021221-2023305 29 4.9
02_03_0167 - 15923872-15925683 29 6.5
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 28 8.6
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 28 8.6
>02_05_0655 + 30668706-30668849,30669043-30669471
Length = 190
Score = 36.3 bits (80), Expect = 0.033
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 324 PSTSLPAMRRT*W-PAYSSGMRLRILCRYLRRPALQNPGICQGGLRPCDCR 175
P T+ P+ RR P SG+RL R+ RR +L P C+GG PC R
Sbjct: 81 PHTNTPSSRRRHHAPLVRSGLRLLGSSRHPRRGSLNCPRHCRGGFSPCHRR 131
>01_01_0820 - 6395150-6395769,6395865-6396294
Length = 349
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 316 QPPGNATHMMACVQFRHATPD-FVQIPSTSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVT 140
+PP + QF T D FV + + P P D PRG + LP R K VT
Sbjct: 76 RPPAGYNSALRVNQFADLTNDEFVSTHTGAKPPCPKDAPRGVDPIWLPCCIDWRYKGAVT 135
Query: 139 E 137
+
Sbjct: 136 D 136
>03_05_0141 - 21210176-21212140
Length = 654
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -1
Query: 313 PPGNATHMMACVQFRHATPDFVQIPSTSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVTEQ 134
PP T A HA P + PSTS +P R TA+ R T P +++++ +
Sbjct: 7 PPPTPTPPCASRDPLHAAPRRSRSPSTS---RPPSRHRRTASAR--STLPAAARDLLADD 61
Query: 133 PTPK 122
PTP+
Sbjct: 62 PTPR 65
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 328 GTFNQPPGNA-THMMACVQFRHATPDFVQIPSTSSSPKPGDMPRGTAAMRLPFTTP 164
GT PP +A + A +P + +P P +PR T+A P TTP
Sbjct: 93 GTLTPPPSSAPSGGRATSSEARESPHATSVDDGGRAPPPPPLPRPTSARATPATTP 148
>04_03_0348 + 14735581-14737071
Length = 496
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 159 LRGVVNGNRMAAVPLGISPGFGEL--DVEGICTKSGVACLNCTQAIM 293
L GVV G R AA+P G+ P + D+ +C + CL A++
Sbjct: 62 LDGVVPGFRFAAIPDGLPPSDPDATQDIPALCYSTMTTCLPHLDALL 108
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Frame = -1
Query: 382 NSHPGGRCKWCPMYSSXKG------TFNQPPGNATHMMACVQFRHATPDFVQIPSTSSSP 221
+S PGG P Y S G + PPG+ T TP + P ++P
Sbjct: 457 HSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTP 516
Query: 220 KPGDMPRGTAAMRLPFTTPRRSKEVVTEQPTP 125
P + A P +P +S P+P
Sbjct: 517 SHPSPPSSSTAP--PSHSPPQSTPTHPSYPSP 546
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = -1
Query: 349 PMYSSXKGTFNQPPGNATHMMACVQFRHATPDFVQIPSTSSSPKPGDMPRGTAAMRLPFT 170
P Y S ++ PPG+ T P + PS++++P P G+++ +
Sbjct: 424 PSYPSPSSSYPAPPGSNT------------PSYPSPPSSATTPSSHSPPGGSSSTTPSYP 471
Query: 169 TPRRSKEVVTEQPTP 125
+P K P+P
Sbjct: 472 SPNGGKPSTPSHPSP 486
>02_03_0167 - 15923872-15925683
Length = 603
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 591 EHCAVLGSYP*CLGHNAALWSAXLPSGKXS 502
+H A GSY CL H A+L +A L G S
Sbjct: 24 QHAAASGSYSRCLRHYASLLAAGLGGGGAS 53
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 241 PSTSSSPKPGDMP-RGTAAMRLPFTTPRRSK 152
PS SSS M R TA++ LPFT PRR +
Sbjct: 89 PSPSSSSHRRSMSARFTASLVLPFTRPRRGR 119
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 235 TSSSPKPGDMPRGTAAMRLPFTTPRRSKEVVTEQPTPKTRNNY 107
T P MP+G ++ + + TPR S++ V + PK N+Y
Sbjct: 247 TGRKPVDHTMPKGQQSL-VTWATPRLSEDKVKQCVDPKLNNDY 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,496,476
Number of Sequences: 37544
Number of extensions: 598797
Number of successful extensions: 1628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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