Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P15
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.5  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   8.8  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 742 AXXXPXXXXPPPPPP 786
           A   P    PPPPPP
Sbjct: 938 AGVMPAFPPPPPPPP 952



 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 769 PPPPPPGXP 795
           PPPPPP  P
Sbjct: 945 PPPPPPPPP 953


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -1

Query: 213 HIAETKTPSPKACSHIGKSV--VGSSLMTDVKHAAKKTPANRKSTDLNMTSLIQIL 52
           H+ ET TP  K  SH  KSV  V  S   D       T   R S+ +N   L+  L
Sbjct: 12  HVIETSTPENKKLSHRFKSVEIVPPSSSNDDPFGFSSTKGIRLSS-INSNDLVNTL 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 768  TPPPPPRXTPXXXFLGXXFPXXPXPXXPPXXP 863
            TPPPPP   P         P  P    PP  P
Sbjct: 1706 TPPPPPMSVPPPP-SAPPMPAGPPSAPPPPLP 1736


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 207 AETKTPS--PKACSHIGKSVVGSSL 139
           A  KTPS  PK CSH+ K V  S L
Sbjct: 44  ASVKTPSTPPKECSHLKKGVKLSHL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,632
Number of Sequences: 5004
Number of extensions: 39269
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)