Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P15
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.0  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 414 NSFYTKHHHFMHQGSRF-KERALIRN 340
           NS  ++ H F H  SR+ +ER+  R+
Sbjct: 215 NSLRSRTHDFQHTSSRYSRERSCSRD 240


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 754 PXXXXPPPPPP 786
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 232 GCTSIVSYSRNKDPIAKSLLAYRQVRRWLITH 137
           GC    +Y  ++      + ++ Q R W ITH
Sbjct: 201 GCNDAFAYMSDELGYGLIVYSWEQNRSWRITH 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,939
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)