Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P14
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.66 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.5  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    27   4.7  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   6.2  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           26   8.2  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = -3

Query: 509 SNGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKSF*YVL 330
           S+ +  ++  +  FSSTL+   +S+ S++S+     +S +S S S PS++  + +     
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST----- 358

Query: 329 YASFQKSESIFLNPSRSS 276
             S  KS S F +   SS
Sbjct: 359 -TSSSKSSSSFSSTVSSS 375


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 384
           K+E +  L+N+D + +K+ YN      VSP   G LN+
Sbjct: 19  KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 496 KTRHWELSFSLQLWHFYICQHYPRIPTAPHTTIAN*VVH 380
           + R+W LS ++Q +H ++      + TAP+T + + + H
Sbjct: 200 RARNWLLSAAIQPYHSWVYWRDVDVETAPNTILEDLMRH 238


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 499 NPLDNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLA 609
           N   +LDF  +AF A +    TV +  P  DPK  L+
Sbjct: 355 NEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLS 391


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 508 DNLDFSSQAFKAGVNRVCTVASIGPHP 588
           DN++ S +A     N  C  +++G HP
Sbjct: 60  DNVENSEEALNLATNYECFTSTVGVHP 86


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 378 QRPFCRWT-HQIFLIRIVCLLPEIRINISQPFSVLNFVMP--YFLXF*PQHYTSVLLLXF 208
           QR FC    H + LI ++   P +++ +    +VL  +MP  Y L   P+   +VL    
Sbjct: 280 QRAFCDLRDHNVTLITLLKAFPSVQLPLDHLLTVLPQLMPRWYSLSNDPKVSNNVLEFAV 339

Query: 207 AVKEL 193
            V E+
Sbjct: 340 TVVEI 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,827
Number of Sequences: 5004
Number of extensions: 37048
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)