Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P11
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   177   7e-45
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    29   5.9  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    29   5.9  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  177 bits (432), Expect = 7e-45
 Identities = 96/204 (47%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
 Frame = +2

Query: 116 LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 289
           +E+ +   L G  L+E  RI +GR       L+ SSI              +   A+ EQ
Sbjct: 11  VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67

Query: 290 TRPPRIVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 469
           TR PR+V+V  IQ+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPF
Sbjct: 68  TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127

Query: 470 AFCTREKQPWCEFAESGEDGAXTTFLRELAIKYAMVIVSSILERDEKHSDILWXXAVVIS 649
           AFCTRE+ PW EFAES   G  T FL +LA+K+ +VI+S ILERDE+  D++W  AVVIS
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVIS 187

Query: 650 DTGXVIGKHRKNHIPRVGDLTNPT 721
            TG VIG+ RKNHIPRVGD    T
Sbjct: 188 HTGRVIGRSRKNHIPRVGDFNEST 211



 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 34/56 (60%), Positives = 40/56 (71%)
 Frame = +1

Query: 706 FNESNYYMEGNTGHPVFATRYGXIAVNICFGRHHVLNWMMFGQXGXEXVFNPSXXI 873
           FNES YYME   GHPVF T+YG I +NIC+GRHH  NWMM+   G E +FNPS  +
Sbjct: 207 FNESTYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMYALNGAEIIFNPSATV 262


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 508
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 374 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 508
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 531 APSSPDSANSH-HGCFSLVQNAK-GIFHNSWKQMMLTP 424
           A + P S+NS  HG F +  N   G FH    Q M+TP
Sbjct: 851 AYNQPSSSNSQQHGQFQVCSNGSLGFFHPQIYQSMMTP 888


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 608 SRPFLISRTRSPLRT*WRVPEGRSXSPRLHLIRQTRTTAASPL 480
           SR    SR+RSP+R   R  E RS SP+  L R+  + + SPL
Sbjct: 117 SRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREA-SRSRSPL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,806
Number of Sequences: 27780
Number of extensions: 360108
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)