Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P10
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 299 SPXPLFXKXPXFXXAXXXPPPXXXGGGGXPPPXXKXFXXPPPP 427
           +P P+    P        PPP    G G PPP       PPPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP------PPPPP 783



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 353 PPPXXXGGGGXPPPXXKXFXXPPPPGXXPXP 445
           PPP    GG  PPP         PP   P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 353 PPPXXXGGGGXPPPXXKXFXXPPPPGXXPXP 445
           PP    GG   PPP        PPP   P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +2

Query: 353 PPPXXXGGGGXP-PPXXKXFXXPPPPGXXPXPXR 451
           PPP     G  P PP  +    PPPP   P   R
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,322
Number of Sequences: 5004
Number of extensions: 16630
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)