Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_P07
(985 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320 31 1.9
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 30 3.3
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 5.7
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 29 5.7
10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722... 29 7.5
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 7.5
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 7.5
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 9.9
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 9.9
>01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320
Length = 313
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 500 PRPPPAHLNRTXRTXPPGPFHTPXSDPP 583
PRPPP HL PP +H+ PP
Sbjct: 12 PRPPPPHLEAYRHGVPPPYYHSYPRPPP 39
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 917 PXPPXPXLPAPTXRFSSPXPLPP 985
P PP P LP P R P P PP
Sbjct: 47 PPPPQPTLPPPPPRTLPPPPPPP 69
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 923 PPXPXLPAPTXRFSSPXPLPP 985
PP P LP PT +P P PP
Sbjct: 57 PPPPPLPTPTVTTPTPPPPPP 77
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 984 GGRGXGDEXRXVGAGSXGXGG 922
GG G GDE VG G G GG
Sbjct: 6 GGGGGGDESEFVGVGGGGGGG 26
>10_08_0397 +
17571492-17571664,17571875-17572034,17572140-17572222,
17572333-17572468,17572515-17572610,17573105-17573218,
17573322-17573405,17573493-17573648,17573744-17573818,
17574318-17574424,17574508-17574688,17574832-17575020,
17575397-17575477,17575621-17575755,17576007-17576329,
17576503-17576608,17576734-17576883,17577034-17577180
Length = 831
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -3
Query: 248 TCLLQLIMXTNXAIASQISQIXHXXXCM*YVVICPNLINVSYQCXHHKINPQVNGNPRRR 69
T + +L+M N + Q+SQ+ H M + P+L N C + PQ NP R
Sbjct: 78 TAMNKLLMEENERLQKQVSQLVHENAYMKQQLQNPSLGN-DTSCESNVTTPQ---NPLRD 133
Query: 68 ATN 60
A+N
Sbjct: 134 ASN 136
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 500 PRPPPAHLNRTXRTXPPGPFHTPXSDPP 583
P PPP H T PP P P SDPP
Sbjct: 430 PPPPPEHPPPPESTSPPPP---PTSDPP 454
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.7 bits (61), Expect = 7.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 500 PRPPPAHLNRTXRTXPPGPFHTPXSDPP 583
PRPPP PP P H P PP
Sbjct: 117 PRPPPPPPPHPPEDPPPHPPHPPDHPPP 144
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.3 bits (60), Expect = 9.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 500 PRPPPAHLNRTXRTXPPGPFHTPXSDPP 583
P PPP +R PP P H P PP
Sbjct: 223 PPPPPPSPHRHPAAHPPPPPHHPAPRPP 250
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 28.3 bits (60), Expect = 9.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 917 PXPPXPXLPAPTXRFSSPXPLPP 985
P PP P PAPT +P P PP
Sbjct: 171 PAPPPPQAPAPTPP-QAPAPTPP 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,805,235
Number of Sequences: 37544
Number of extensions: 150136
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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