Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_P06
(1049 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0955 + 22994266-22995630 32 0.87
06_03_0790 - 24636805-24637770 31 1.5
01_01_0570 - 4231100-4232560 30 3.5
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 4.7
03_06_0217 - 32432590-32433495 29 4.7
07_03_1751 - 29215074-29216270 29 6.2
07_03_0558 + 19461369-19462448 29 6.2
03_02_0765 + 11000724-11002496 29 6.2
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 29 6.2
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 29 8.1
>08_02_0955 + 22994266-22995630
Length = 454
Score = 31.9 bits (69), Expect = 0.87
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 1049 VWGGXXXGAXXGXGGGXGXGGG 984
VWG GA G GGG G GGG
Sbjct: 284 VWGTKSGGAGAGSGGGGGGGGG 305
>06_03_0790 - 24636805-24637770
Length = 321
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 1049 VWGGXXXGAXXGXGGGXGXGGG 984
VW G G G GGG G GGG
Sbjct: 79 VWSGGGGGGGGGGGGGGGGGGG 100
>01_01_0570 - 4231100-4232560
Length = 486
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 1049 VWGGXXXGAXXGXGGGXGXGGG 984
V GG GA G GGG G GGG
Sbjct: 75 VGGGTGGGAAGGLGGGGGGGGG 96
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 162 GGGGIGAGGGFGGGAGAGGG 181
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.5 bits (63), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 628 PPHLPXAXPXAPPPTXP 678
PPH+P A P PPP P
Sbjct: 142 PPHVPKAAPPPPPPPPP 158
>03_06_0217 - 32432590-32433495
Length = 301
Score = 29.5 bits (63), Expect = 4.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 1049 VWGGXXXGAXXGXGGGXGXGGG 984
V GG GA G GGG G GGG
Sbjct: 119 VVGGAAVGATAGVGGGGGVGGG 140
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 143 GGAGGGAGAGVGGGAGAGGG 162
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 171 GGAGGGAGGGLGGGSGGGGG 190
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 213 GGLGGGAGGGAGGGGGLGGG 232
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 227 GGLGGGAGGGHGGGGGLGGG 246
>07_03_0558 + 19461369-19462448
Length = 359
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 85 GGLGGGASGGVGGGGGFGGG 104
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 159 GGVGGGAGGGVGGGGGFGGG 178
>03_02_0765 + 11000724-11002496
Length = 590
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 144 GGLGGGAGGGLGGGAGGGGG 163
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 162 GGLGGGAGGGLGGGAGGGGG 181
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 212 GGLGGGAGGGLGGGAGGGGG 231
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 244 GGLGGGAGGGLGGGAGGGGG 263
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 262 GGLSGGAGGGLGGGAGAGGG 281
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 302 GGLGGGAGGGLGGGAGAGGG 321
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 342 GGLGGGAGGGLGGGAGAGGG 361
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 382 GGLGGGAGGGLGGGAGAGGG 401
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 422 GGLGGGAGGGLGGGAGAGGG 441
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 476 GGFGGGAGAGTGGGGGLGGG 495
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 500 GGLGGGAGGGLGGGAGAGGG 519
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 548 GGAGGGAGAGFGGGAGAGGG 567
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 566 GGGGLGAGGGGGGGFGGGGG 585
>03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 1043 GGXXXGAXXGXGGGXGXGGG 984
GG GA G GGG G GGG
Sbjct: 102 GGGGWGAGGGGGGGGGGGGG 121
>01_06_0561 + 30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 1046 WGGXXXGAXXGXGGGXGXGGG 984
WG G G GGG G GGG
Sbjct: 15 WGEGEEGGRRGGGGGGGGGGG 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,055,718
Number of Sequences: 37544
Number of extensions: 189443
Number of successful extensions: 3793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3304
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3106134136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -