Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_P01
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 100 1e-21
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 98 9e-21
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 95 5e-20
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 69 5e-12
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 35 0.072
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 31 1.2
10_01_0204 + 2199778-2200835,2201212-2201311 30 2.0
09_06_0081 + 20745627-20748144,20748211-20748308 29 4.7
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 6.2
11_06_0683 + 26259129-26259968 28 8.3
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 100 bits (240), Expect = 1e-21
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = +1
Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPD 540
P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H DD GK H
Sbjct: 191 PEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHEL 250
Query: 541 SRKTGNAGGRVACGVIGI 594
S+ TGNAGGRVACG+IG+
Sbjct: 251 SKTTGNAGGRVACGIIGL 268
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3
Query: 231 SGXVSLGLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
+G VS GL PG +GFH+H G + GC+STG H+NP K+ G+ E
Sbjct: 149 TGSVS-GLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPE 192
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 97.9 bits (233), Expect = 9e-21
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = +1
Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPD 540
P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H DD GK H
Sbjct: 73 PQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHEL 132
Query: 541 SRKTGNAGGRVACGVIGI 594
S+ TGNAGGRVACG+IG+
Sbjct: 133 SKTTGNAGGRVACGIIGL 150
Score = 55.6 bits (128), Expect = 5e-08
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 222 GPRS--GXVSLGLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
GP S G VS GL PG +GFHVH G + GC+STG HFNP K+ G+ +
Sbjct: 26 GPTSVTGSVS-GLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQ 74
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 95.5 bits (227), Expect = 5e-20
Identities = 44/85 (51%), Positives = 55/85 (64%)
Frame = +1
Query: 340 NIRTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDY 519
N T P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE DD
Sbjct: 116 NNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDL 175
Query: 520 GKSDHPDSRKTGNAGGRVACGVIGI 594
GK H S TGNAGGR+ACGV+G+
Sbjct: 176 GKGGHELSLSTGNAGGRLACGVVGL 200
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 222 GPRSGXVSL-GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
GP + V + GL PG +GFH+HE G + GC+STG HFNP + G+ E
Sbjct: 76 GPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPE 124
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 68.9 bits (161), Expect = 5e-12
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +1
Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 525
P+D RHVGDLGN+V +++ + I + D QISLSGPH I+GRAVV+H +DD G+
Sbjct: 83 PSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
Score = 52.0 bits (119), Expect = 6e-07
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGS 359
GL PG +GFH+H G + GC STG HFNP +K G+
Sbjct: 46 GLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 35.1 bits (77), Expect = 0.072
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNP 338
GL PG++G+ ++E G L+ G STG +NP
Sbjct: 198 GLSPGKHGWSINEFGDLTRGAESTGKVYNP 227
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTG 323
GL P +GFHVH G + GC+ G
Sbjct: 45 GLKPVLHGFHVHALGGTTNGCMRNG 69
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 378 SRRRPWK--RGL*REPLQQDRPGRRPDLAIGSARHHRQGGGAPR 503
+R+RP + RG REP+ + A+G+AR R GGGA R
Sbjct: 27 TRKRPSRTSRGSQREPVGGAGRKEKAKSAVGAARAERWGGGAER 70
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 581 PQATRPPAXPVFLESGWSLLP*SSAFSWSTTALPMMPCGP 462
P+A+ PA PV GW++ P ++ +S+S + P
Sbjct: 591 PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAP 630
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = +3
Query: 381 RRRPWKRGL*REPLQQDRP-----GRRPDLAIGSARHHRQGGG 494
RRRPW RG R + P GRRP G H + GG
Sbjct: 47 RRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGG 89
>11_06_0683 + 26259129-26259968
Length = 279
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 255 PPGEYGFHVHEKGXLSGGC-VSTGSHFNPEHKDXGSSE 365
PP YG+H+H G C + G H++P + S++
Sbjct: 224 PPPCYGYHLHYCHCTHGHCHCAGGRHYSPSYYSDDSAD 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,612
Number of Sequences: 37544
Number of extensions: 314982
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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