Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_P01
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...    91   1e-18
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...    89   5e-18
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.     89   5e-18
X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...    76   4e-14
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...    76   4e-14
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...    76   4e-14
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...    76   4e-14
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...    69   4e-12
AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical ...    34   0.11 
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    34   0.11 
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    30   2.4  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    30   2.4  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    30   2.4  

>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 41/79 (51%), Positives = 54/79 (68%)
 Frame = +1

Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPD 540
           P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+     
Sbjct: 98  PDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQ 157

Query: 541 SRKTGNAGGRVACGVIGIL 597
           S+ TGNAG R+ACG IGI+
Sbjct: 158 SKTTGNAGSRLACGTIGIV 176



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 231 SGXVSLGLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
           +G VS GL  G++GFH+HEKG    GC+S G H+NP     G+ +
Sbjct: 56  NGSVS-GLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 40/77 (51%), Positives = 52/77 (67%)
 Frame = +1

Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPD 540
           P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+     
Sbjct: 98  PDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQ 157

Query: 541 SRKTGNAGGRVACGVIG 591
           S+ TGNAG R+ACG IG
Sbjct: 158 SKTTGNAGSRLACGTIG 174



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 231 SGXVSLGLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
           +G VS GL  G++GFH+HEKG    GC+S G H+NP     G+ +
Sbjct: 56  NGSVS-GLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 40/77 (51%), Positives = 52/77 (67%)
 Frame = +1

Query: 361 PNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPD 540
           P+D NRH+GDLGN+    +  + I + D   SLSG + IIGR+VV+HEK DD G+     
Sbjct: 98  PDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQ 157

Query: 541 SRKTGNAGGRVACGVIG 591
           S+ TGNAG R+ACG IG
Sbjct: 158 SKTTGNAGSRLACGTIG 174



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 231 SGXVSLGLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
           +G VS GL  G++GFH+HEKG    GC+S G H+NP     G+ +
Sbjct: 56  NGSVS-GLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99


>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = +1

Query: 346 RTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 525
           +T   P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H   DD G+
Sbjct: 69  KTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 128

Query: 526 ---SDHPDSRKTGNAGGRVACGVIGI 594
                  +S+KTGNAG R ACGVI +
Sbjct: 129 GVGDKAEESKKTGNAGARAACGVIAL 154



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +3

Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXG 356
           GL PG +GFHVH+ G  + GC+S G HFNP  K  G
Sbjct: 37  GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = +1

Query: 346 RTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 525
           +T   P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H   DD G+
Sbjct: 69  KTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 128

Query: 526 ---SDHPDSRKTGNAGGRVACGVIGI 594
                  +S+KTGNAG R ACGVI +
Sbjct: 129 GVGDKAEESKKTGNAGARAACGVIAL 154



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +3

Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXG 356
           GL PG +GFHVH+ G  + GC+S G HFNP  K  G
Sbjct: 37  GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = +1

Query: 346 RTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 525
           +T   P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H   DD G+
Sbjct: 69  KTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 128

Query: 526 ---SDHPDSRKTGNAGGRVACGVIGI 594
                  +S+KTGNAG R ACGVI +
Sbjct: 129 GVGDKAEESKKTGNAGARAACGVIAL 154



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +3

Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXG 356
           GL PG +GFHVH+ G  + GC+S G HFNP  K  G
Sbjct: 37  GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
 Frame = +1

Query: 346 RTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 525
           +T   P    RHVGDLGNV    +  ++I L D  ++L GP+ ++GR++V+H   DD G+
Sbjct: 91  KTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 150

Query: 526 ---SDHPDSRKTGNAGGRVACGVIGI 594
                  +S+KTGNAG R ACGVI +
Sbjct: 151 GVGDKAEESKKTGNAGARAACGVIAL 176



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +3

Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXG 356
           GL PG +GFHVH+ G  + GC+S G HFNP  K  G
Sbjct: 59  GLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 94


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
 Frame = +1

Query: 364 NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDH 534
           + V RHVGDLGNV    +  ++I   D  +SL G + +IGR++V+H   DD G+      
Sbjct: 95  DSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKA 154

Query: 535 PDSRKTGNAGGRVACGVIGI 594
            +S KTGNAG R ACGVI +
Sbjct: 155 EESLKTGNAGARAACGVIAL 174



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +3

Query: 249 GLPPGEYGFHVHEKGXLSGGCVSTGSHFNPEHKDXGSSE 365
           GL PG +GFH+H+ G  + GC S G HFNP   + G  +
Sbjct: 57  GLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRD 95


>AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical
           protein H05C05.1b protein.
          Length = 219

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +3

Query: 252 LPPGEYGFH----VHEKGXLSGGCVSTGSHFNPEHKDXGSSERCQPSRRRPWKRGL*REP 419
           +P G++G H           SGG    G   N    D  SS+R Q  RR     G     
Sbjct: 81  VPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQQQRRSSMSAGSESGG 140

Query: 420 LQQDRPGRRPDLAIGSARHHRQGGG 494
                 G++P  + GSAR  R GGG
Sbjct: 141 RGGGGGGQKPSSSRGSARGMRGGGG 165


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +3

Query: 252 LPPGEYGFH----VHEKGXLSGGCVSTGSHFNPEHKDXGSSERCQPSRRRPWKRGL*REP 419
           +P G++G H           SGG    G   N    D  SS+R Q  RR     G     
Sbjct: 585 VPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQQQRRSSMSAGSESGG 644

Query: 420 LQQDRPGRRPDLAIGSARHHRQGGG 494
                 G++P  + GSAR  R GGG
Sbjct: 645 RGGGGGGQKPSSSRGSARGMRGGGG 669


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
           protein.
          Length = 1497

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 313 YRLDLISILNIRTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 477
           Y +D I IL + +     D N  V DL + +F   H+SR+D+V   I     +G+
Sbjct: 374 YSVDEI-ILGMASQIAERDDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
           cuticle protein 3 protein.
          Length = 1497

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 313 YRLDLISILNIRTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 477
           Y +D I IL + +     D N  V DL + +F   H+SR+D+V   I     +G+
Sbjct: 374 YSVDEI-ILGMASQIAERDDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 313 YRLDLISILNIRTXXHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 477
           Y +D I IL + +     D N  V DL + +F   H+SR+D+V   I     +G+
Sbjct: 384 YSVDEI-ILGMASQIAERDDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,569,100
Number of Sequences: 27780
Number of extensions: 235158
Number of successful extensions: 548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)