Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_O22
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 183 3e-47
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 146 4e-36
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 145 6e-36
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 136 5e-33
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 130 3e-31
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 125 7e-30
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 122 7e-29
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 122 7e-29
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 119 5e-28
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 113 2e-26
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 111 1e-25
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 110 2e-25
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 108 1e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 106 5e-24
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 101 1e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 100 2e-22
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 99 1e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 97 3e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 93 5e-20
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 82 9e-17
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 77 3e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 69 7e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 69 1e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.22
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.22
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 8.2
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 26 8.2
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 183 bits (446), Expect = 3e-47
Identities = 95/211 (45%), Positives = 133/211 (63%), Gaps = 1/211 (0%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
I +++MGFE T IQ +++P LL +D++GAAKTGSGKTLAFLIP ++ L L F +
Sbjct: 100 IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR 159
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
+GTG II+SPTRELALQ F V K LL + +++GG + + KL KG+N++V+TP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 570 GRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXD-XQTVXFXATID 746
GRLLDHLQ T F NL+ L+ DEAD +L GFE + ++ LP + QT+ F AT
Sbjct: 220 GRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQT 279
Query: 747 DXXXNLXXLALXXXPIWIXVDXXXXXXPVPG 839
+L ++L P+++ VD V G
Sbjct: 280 TKVEDLARISLKPGPLYVNVDSGKPTSTVEG 310
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 146 bits (354), Expect = 4e-36
Identities = 78/188 (41%), Positives = 111/188 (59%)
Frame = +3
Query: 216 STLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKHG 395
S L+ F T IQ Q +P L+ +D++GAAKTGSGKTLAF++P ++ L + +T G
Sbjct: 52 SALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDG 111
Query: 396 TGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTPGR 575
G +++SPTRELA+QTFE L ++ S LI+GG ++ +L + MNI+V TPGR
Sbjct: 112 LGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGR 170
Query: 576 LLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXATIDDXX 755
LL H+ F+ L+ LI DEAD +L GF + + LP QT+ F AT
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV 230
Query: 756 XNLXXLAL 779
+L L+L
Sbjct: 231 KDLARLSL 238
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 145 bits (352), Expect = 6e-36
Identities = 76/200 (38%), Positives = 118/200 (59%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
IL L +GFE PT+IQ + +P L KD++GAA TGSGKT AF++P +++L+ +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
T +IL PTRELA+Q V ++ + DI CL +GG +L+K +IV++TP
Sbjct: 330 T-TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATP 388
Query: 570 GRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXATIDD 749
GR +DH++ + F N++ ++ DEAD +L GF + ++ P QT+ F AT+ D
Sbjct: 389 GRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTD 448
Query: 750 XXXNLXXLALXXXPIWIXVD 809
+L L+L P+ + VD
Sbjct: 449 KVDDLIRLSL-NRPVRVFVD 467
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 136 bits (328), Expect = 5e-33
Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 5/186 (2%)
Frame = +3
Query: 198 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 377
+ + +S + +G+E+PT IQAQA+P + +D+IG AKTGSGKT+AFL+P + + IK
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP-MFRHIKDQ 483
Query: 378 FTLKHGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMN 551
LK G G II++PTRELA+Q F K L ++I C GG ++ L++G
Sbjct: 484 RPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 552 IVVSTPGRLLDHLQTTNTFNCXNL-KC--LIXDEADXLLXSGFEKHVXGXLEXLPXDXQT 722
IVV TPGR++D L + N NL +C L+ DEAD + GFE V + + D QT
Sbjct: 544 IVVCTPGRMIDVL-SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602
Query: 723 VXFXAT 740
V F AT
Sbjct: 603 VLFSAT 608
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 130 bits (314), Expect = 3e-31
Identities = 76/202 (37%), Positives = 112/202 (55%)
Frame = +3
Query: 174 TFSMLKGKIDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPA 353
TF L G ID + ++GF+ PT IQ +A+P +L ++D+IG A+TGSGKT AF +P
Sbjct: 47 TFKEL-GVID-ELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPV 104
Query: 354 VDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSK 533
+ +L + ++L+PTRELA Q E + + I + +IVGG
Sbjct: 105 IQEL----WNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVA 160
Query: 534 LQKGMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXD 713
L K +++V TPGRL+DHL+ T F+ NLK LI DEAD LL F + L+ +P +
Sbjct: 161 LSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
Query: 714 XQTVXFXATIDDXXXNLXXLAL 779
+T+ F AT+ L +L
Sbjct: 221 RRTLLFSATMTSKVEKLQRASL 242
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 125 bits (302), Expect = 7e-30
Identities = 70/178 (39%), Positives = 100/178 (56%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L + + GF+ PT IQ + +P LL+ +D++G A+TGSGKT AF+IP ++ L
Sbjct: 80 LLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL--KSTLAN 137
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
T +ILSP RELALQT +V+K D+ IVGG + S L +IVV+TP
Sbjct: 138 SNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATP 197
Query: 570 GRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXATI 743
GR L HL+ +++ ++ DEAD L GF + L LP QT+ F AT+
Sbjct: 198 GRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATL 254
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 122 bits (294), Expect = 7e-29
Identities = 69/180 (38%), Positives = 106/180 (58%), Gaps = 10/180 (5%)
Frame = +3
Query: 195 KIDCRILSTLR-QMGFERPTRIQAQALPYLLQ--QKDLIGAAKTGSGKTLAFLIPAVDQL 365
++D ++ L +M PT IQ+ LP LL KD A+TGSGKTLA+L+P V +L
Sbjct: 144 QLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
Query: 366 IKLG---FTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISH----CLIVGGEKKNKD 524
I+L T G +I++PTREL Q + V +L + +SH C ++GGEKK +
Sbjct: 204 IRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNN-PLSHWIVSCNVIGGEKKKSE 262
Query: 525 VSKLQKGMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXL 704
++++KG+NI++ TPGRL DHL+ T + ++ ++ DE D L+ GFE+ + L L
Sbjct: 263 KARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYL 322
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 122 bits (294), Expect = 7e-29
Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L ++Q+GFE PT IQ QA P + +D++G + TGSGKTL++ +PA+ I L
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH-INAQPLLS 191
Query: 390 HGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 563
G G ++L+PTRELA+Q + + I + + GG + + L +G+ I ++
Sbjct: 192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIA 251
Query: 564 TPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXAT 740
TPGRLLD L + T N + L+ DEAD +L GFE + ++ + D QTV F AT
Sbjct: 252 TPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSAT 309
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 119 bits (287), Expect = 5e-28
Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Frame = +3
Query: 237 FERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKHGTGCIILS 416
++ PT IQA PYLL +D++G A+TGSGKT+AF IPA+ L L K +++S
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDN-KSVPRVLVVS 243
Query: 417 PTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTPGRLLDHLQT 596
PTRELA+QT+E L L+ ++ ++ GG K++ ++ K ++++ TPGRLLD L
Sbjct: 244 PTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLD-LIN 301
Query: 597 TNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLP-----XDXQTVXFXAT 740
+ +C + L+ DEAD +L +GFE+ + + P QTV F AT
Sbjct: 302 DGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 113 bits (273), Expect = 2e-26
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Frame = +3
Query: 198 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 377
ID + + + GF++ T +QA A+P L+ KDL+ A TGSGKTLA+L+P D++ +
Sbjct: 8 IDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRD 67
Query: 378 FTLKHGTGCIILSPTRELALQTFEVLKRLLT----DIDISHCLI----VGGE--KKNKDV 527
T + G G +I++PTRELA Q F V K LL +D L+ +GG+ N
Sbjct: 68 -TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLA 126
Query: 528 SKLQKGMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLP 707
S +K ++V+ TPGRL + L + + +L+ LI DEAD L+ GF++ + + LP
Sbjct: 127 SFREKNPSVVIGTPGRLNEML---SHISSKHLEILILDEADTLIDMGFQRTLQSIISQLP 183
Query: 708 XDXQTVXFXATIDDXXXNLXXLA 776
+T F AT++D + +A
Sbjct: 184 KQRRTGLFSATMNDTVSSFLKIA 206
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 111 bits (267), Expect = 1e-25
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIP---AVDQLIKLGF 380
+L L+++ ++ P+ IQ A+P LLQ+KDLIG A+TGSGKT AF+IP A+ +L L
Sbjct: 260 MLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTE 319
Query: 381 TLKH-GTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIV 557
+ H G ++L+PTRELA Q + + +VGG + ++ +G +IV
Sbjct: 320 SNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIV 379
Query: 558 VSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLP 707
V+TPGRLLD L+ F ++ DEAD +L GFE V L LP
Sbjct: 380 VATPGRLLDCLE-RRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 110 bits (265), Expect = 2e-25
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
++ TL+ + PT IQ + +L+ ++ IG AKTGSGKT AF +P +++ K
Sbjct: 18 LIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKD----P 73
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
G +IL+PTRELA+Q E L ++++ H LIVGG + L K ++VV+TP
Sbjct: 74 SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATP 133
Query: 570 GRLLDHLQTTNTFNCXNL---KCLIXDEADXLLXSGFEKHVXGXLEXLP--XDXQTVXFX 734
GRL D +++ L K L+ DEAD LL F + LP D QT+ F
Sbjct: 134 GRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFT 193
Query: 735 ATIDDXXXNL 764
AT+ D L
Sbjct: 194 ATVTDAIRQL 203
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 108 bits (259), Expect = 1e-24
Identities = 67/199 (33%), Positives = 106/199 (53%)
Frame = +3
Query: 147 SANDIYAKCTFSMLKGKIDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSG 326
++ D+ A +F + K D +L + G+E P+ +Q++A+ + + +D+I A++G+G
Sbjct: 13 TSEDVNAVSSFEEMNLKED--LLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTG 70
Query: 327 KTLAFLIPAVDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGG 506
KT F I + Q I L T +ILSPTRELA+Q V+ L +++ +GG
Sbjct: 71 KTATFSI-GILQSIDLSV---RDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Query: 507 EKKNKDVSKLQKGMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVX 686
D+ KL G ++V TPGR+ D ++ N N+K LI DEAD LL GF++ +
Sbjct: 127 TSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRN-LRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 687 GXLEXLPXDXQTVXFXATI 743
LP Q V AT+
Sbjct: 186 DIYRYLPPGTQVVVVSATL 204
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 106 bits (254), Expect = 5e-24
Identities = 63/177 (35%), Positives = 96/177 (54%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L + + GFERP+ IQ +++P L +D++ AK G+GKT AF+IP+++++ T K
Sbjct: 55 LLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVD----TKK 110
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
+IL PTRELALQT +V K L +++ + GG D+ +L ++IVV TP
Sbjct: 111 SKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTP 170
Query: 570 GRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXAT 740
GR+LD L + + DEAD LL F + L P + Q + AT
Sbjct: 171 GRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSAT 226
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 101 bits (243), Expect = 1e-22
Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 4/187 (2%)
Frame = +3
Query: 216 STLRQMGFERPTRIQAQALPYLL-QQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLKH 392
++L + GFE+ T +Q + L + +++ + AKTG+GKTLAFL+ A ++K L
Sbjct: 51 NSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNS 110
Query: 393 GT-GCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKG-MNIVVST 566
+ILSPTRELALQ FE ++L I +GG K ++ + +++G N++++T
Sbjct: 111 SKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIAT 170
Query: 567 PGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXL-PXDXQTVXFXATI 743
PGRL DHLQ + I DEAD L+ GF + + E + + + F AT+
Sbjct: 171 PGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATM 230
Query: 744 DDXXXNL 764
N+
Sbjct: 231 PPKVSNV 237
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 100 bits (240), Expect = 2e-22
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 5/197 (2%)
Frame = +3
Query: 198 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLG 377
+D R+ + + FE+PT +Q++ +P L+ KDL+ A+TGSGKT A+LIP ++ L+K
Sbjct: 21 LDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQK 80
Query: 378 FTLKHGTG--CIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSK---LQK 542
++ G ++L PTRELA Q + VL++ LT H + + D + L
Sbjct: 81 QIDENQRGIFALLLVPTRELAQQVYNVLEK-LTAFCSKHIRFINVATNSSDTVQRPLLLD 139
Query: 543 GMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQT 722
+IV++TP R + H+ + LK L+ DEAD +L G+ + + LP Q+
Sbjct: 140 LPDIVIATPSRCVVHV-ASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQS 198
Query: 723 VXFXATIDDXXXNLXXL 773
AT+ +L L
Sbjct: 199 FLMSATLSKNIASLQKL 215
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 98.7 bits (235), Expect = 1e-21
Identities = 59/178 (33%), Positives = 99/178 (55%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L + GFERP+ IQ +A+ +L ++D++ A++G+GKT F ++ L K+ +LK
Sbjct: 30 LLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF---SISVLQKIDTSLK 86
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
+IL+PTRELA Q +V+ L +++ +GG D++ LQ G+++VV TP
Sbjct: 87 Q-CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTP 145
Query: 570 GRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXLPXDXQTVXFXATI 743
GR+ D +Q ++ + DEAD +L GF+ + + LP Q V AT+
Sbjct: 146 GRVHDMIQ-RRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATM 202
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 97.1 bits (231), Expect = 3e-21
Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 5/185 (2%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L +L + GF +P IQ+ +P D+IG A TGSGKTLAF IP ++ ++ K
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR-NVDAK 191
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVSTP 569
+ ++++PTRELA Q + + + +I I GG K L K ++VV+TP
Sbjct: 192 Y-VQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
Query: 570 GRLLDHLQTTN-TFNCXNLKCLIXDEADXLLXSGFEKHVXGXLEXL----PXDXQTVXFX 734
GRL + N T N +KCL+ DEAD LL + + LE L QT F
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFS 310
Query: 735 ATIDD 749
AT D+
Sbjct: 311 ATFDE 315
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 93.1 bits (221), Expect = 5e-20
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 18/199 (9%)
Frame = +3
Query: 198 IDCRILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIP--------- 350
++ +L ++ G+ +PT +Q ++P + +DL+ A+TGSGKT FL P
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 351 ----AVDQLIKLGF-TLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKK 515
VDQ +G+ K +IL+PTREL Q E ++ + C + GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADI 295
Query: 516 NKDVSKLQKGMNIVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHVXGXL 695
+ ++ +G +++ +TPGRL+D L + N+K L+ DEAD +L GFE + +
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVD-LIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIV 354
Query: 696 EXLP----XDXQTVXFXAT 740
E + QT+ F AT
Sbjct: 355 EGADMTSVEERQTLMFSAT 373
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 82.2 bits (194), Expect = 9e-17
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Frame = +3
Query: 198 IDCRILSTLRQMGFERPTRIQAQALPYLLQQK----------DLIGAAKTGSGKTLAFLI 347
I +++ L++ R +QA LP LLQ D+ +A TGSGKTL+++I
Sbjct: 133 ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVI 192
Query: 348 PAVDQLIKLGFTLKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDV 527
P V L T+ C+++ PTREL +Q + + ++ + C G + +
Sbjct: 193 PIVQCLSHR--TVPR-LRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHET 249
Query: 528 SKLQKGMN-----IVVSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGFEKHV 683
+L N ++VSTPGRL+DH++ +F+ +L+ ++ DEAD LL F+ V
Sbjct: 250 YQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWV 306
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 77.0 bits (181), Expect = 3e-15
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+ L++ T IQ A+P + ++DL+ A TGSGKT+A+L P L KL +
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPI---LQKLQLHVP 113
Query: 390 HGTGCIILSPTRELALQTFEVLKRLL--TDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 563
G II++PTREL Q + ++L T + I L EK + KL++ ++ +
Sbjct: 114 GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIE-LSKSNEKIQEKAPKLREKYDMCIG 172
Query: 564 TPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXSGF 671
TP RL+ +QT +F ++ + DEAD L GF
Sbjct: 173 TPMRLVQAIQTGLSFE--KVEFFVMDEADRLFEPGF 206
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 69.3 bits (162), Expect = 7e-13
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 3/183 (1%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQ--KDLIGAAKTGSGKTLAFLIPAVDQLIKLGFT 383
+L + M F++P++IQ +ALP LL +++IG +++G+GKT AF A+ L ++ +
Sbjct: 125 LLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF---ALTMLSRVDAS 181
Query: 384 LKHGTGCIILSPTRELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKGMNIVVS 563
+ I L+P+RELA Q +V+ + ++ + K+ + IV+
Sbjct: 182 VPK-PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----KDSVPKGAKIDAQIVIG 236
Query: 564 TPGRLLDHLQTTNTFNCXNLKCLIXDEADXLL-XSGFEKHVXGXLEXLPXDXQTVXFXAT 740
TPG ++D L + ++K + DEAD +L G LP + Q V F AT
Sbjct: 237 TPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 295
Query: 741 IDD 749
+
Sbjct: 296 FSE 298
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.5 bits (160), Expect = 1e-12
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Frame = +3
Query: 210 ILSTLRQMGFERPTRIQAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAVDQLIKLGFTLK 389
+L + GFE P+ +Q +P + D++ AK+G GKT F++ + Q+ + +
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEV- 120
Query: 390 HGTGCIILSPTRELALQTFEVLKRLLTDI-DISHCLIVGGEKKNKDVSKLQ---KGMNIV 557
++L TRELA Q R + D+ + GG +D+ + K +IV
Sbjct: 121 ---SVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 558 VSTPGRLLDHLQTTNTFNCXNLKCLIXDEADXLLXS-GFEKHVXGXLEXLPXDXQTVXFX 734
V+TPGR L+ L ++K + DE D LL S + + P Q + F
Sbjct: 178 VATPGR-LNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 735 ATIDD 749
AT+ +
Sbjct: 237 ATLSN 241
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 279 LLQQKDLIGAAKTGSGKTLAFLIPAV 356
LL + +LI TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 279 LLQQKDLIGAAKTGSGKTLAFLIPAV 356
LL + +LI TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 258 QAQALPYLLQQKDLIGAAKTGSGKTLAFLIPAV 356
Q +A+ L KD+ TG GK+L + +PAV
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 151 LTIFMLSVHFPCSKVKSTVEFF 216
L+ F L +H PCS T+ FF
Sbjct: 42 LSFFALLLHLPCSIYSHTLHFF 63
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 423 RELALQTFEVLKRLLTDIDISHCLIVGGEKKNKDVSKLQKG 545
R L ++T V+KR++ D++++H I EK+ + SK+ G
Sbjct: 6 RSLVIKT-NVVKRIIKDVELAHIDINEAEKRVQ--SKIDNG 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,565
Number of Sequences: 5004
Number of extensions: 48310
Number of successful extensions: 167
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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