Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O21
         (1034 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   5.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   10.0 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   10.0 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   10.0 

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 356 VADPELVAVLHGVPSLVNDQVVDYILDDG 270
           V D   V + H +PS+V D   DYI  +G
Sbjct: 239 VYDSPWVDLTHSLPSVVADDAADYIPSEG 267


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +3

Query: 618 PQSPTXPXXAPXNXSTPSPPXXTXPPNPXNXXXGXXPGXXSTAXTHPPXETXT 776
           P +PT P  +  + STP PP  T      +          +T+ + PP    T
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +3

Query: 618 PQSPTXPXXAPXNXSTPSPPXXTXPPNPXNXXXGXXPGXXSTAXTHPPXETXT 776
           P +PT P  +  + STP PP  T      +          +T+ + PP    T
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 541  PPSTXXTFXXLRXGXTNPPXSXXKGSPNP 627
            PPST  TF     G T  P      +PNP
Sbjct: 1050 PPSTGFTFTPSNAGSTAAPMFGAGNTPNP 1078


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 162 SLPTRSSRRNCTTASSXGNYXSAVAQSLEHXKQNRGSIIQN 284
           +LP  +   +  T  + GN  S   +S +  K N GSI  N
Sbjct: 534 ALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSN 574


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 618  PQSPTXPXXAPXNXSTPSPPXXTXPPNPXNXXXGXXPGXXSTAXTHP 758
            P S   P   P     P PP  T PP P     G  P    TA   P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVP-TPSAGLPPVPVPTAKAPP 1238


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 147  SWM*TSLPTRSSRRN-CTTASSXGNYXSAVAQSLEHXKQNRGSIIQNVVDDLIIDKRRNT 323
            S++   +P    RR    + +   +Y   +  SLE    N  S I+  V D I   +   
Sbjct: 897  SYLVDGMPENDPRREPFESRTKCYSYIFEILDSLESQMSNDSSAIKVDVYDTIQRSKDEL 956

Query: 324  MEYCYXLW 347
              YC+  W
Sbjct: 957  FHYCFYDW 964


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,637
Number of Sequences: 5004
Number of extensions: 26425
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)