Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O18
         (1364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/58 (24%), Positives = 18/58 (31%)
 Frame = +2

Query: 1184 TGVPRXXRLAPXXHTRXPPPPXPTXPXPAXXSXRGPPXLPREVXPXPXLXXXTIPPTP 1357
            T  P    + P      PP P    P P+       P  P +  P        +PP P
Sbjct: 141  TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 1235 PPPPXPTXPXPAXXSXRGPPXLPREVXPXPXLXXXTIP 1348
            PP P PT   P   S  G P  P  V P P     +IP
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPV-PAPSSEIPSIP 1077



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 1235 PPPPXPTXPXPAXXSXRGPPXLPREVXPXPXLXXXT--IPPTP 1357
            PP P P+   P   +  G P +P+     P +   +  IPP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +2

Query: 1178 IRTGVPRXXRLAPXXHTRXPPPPXPTXPXPAXXSXRGPPXLPRE--VXPXPXLXXXTIPP 1351
            I T  P   + +    +  PP P P+   P+  +  G P +P    + P P       PP
Sbjct: 1045 IPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK-PSVAAPP 1103

Query: 1352 TP 1357
             P
Sbjct: 1104 VP 1105



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 1214 PXXHTRXPPPPXPTXPXPAXXSXRGPPXLPR-EVXPXPXLXXXTIPPTP 1357
            P      PP P P+   P   +  G P +P+  V   P       PP P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,281
Number of Sequences: 5004
Number of extensions: 12199
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 753140462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)