Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O17
         (1123 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 734 LIXPPSPXPAXLPPXPPTKXXXPXPP 811
           ++  P+P P  +PP  P     P PP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 743  PPSPXPAXLPPXP-PTKXXXPXPP 811
            PP P P+  PP P P+    P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 752 PXPAXLPPXPPT 787
           P PA  PP PPT
Sbjct: 234 PLPAPPPPPPPT 245



 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 767 LPPXPPTKXXXPXPPXHXXT 826
           +PP P T    P PP +  T
Sbjct: 272 IPPPPATPSQPPRPPTNAST 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,647
Number of Sequences: 5004
Number of extensions: 26421
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)