Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O16
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   137   2e-33
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   134   1e-32
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    35   0.013
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    29   1.2  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   3.5  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.1  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  137 bits (331), Expect = 2e-33
 Identities = 72/125 (57%), Positives = 91/125 (72%)
 Frame = +3

Query: 159 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 338
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+AGR+ 
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 339 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLXGENPLQVLVTAII 518
            KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LL  +NPLQVLV A+ 
Sbjct: 57  TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116

Query: 519 NSGPR 533
             GPR
Sbjct: 117 ACGPR 121



 Score =  128 bits (308), Expect = 1e-30
 Identities = 63/84 (75%), Positives = 70/84 (83%)
 Frame = +1

Query: 529 PXEDXTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAXELINA 708
           P ED TRIG AGTVRR AVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A E+INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179

Query: 709 AKGSSNPYAIKXKDXLXRVVKSXR 780
           AKGSSN YAIK KD L RV KS R
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  134 bits (325), Expect = 1e-32
 Identities = 72/121 (59%), Positives = 87/121 (71%), Gaps = 3/121 (2%)
 Frame = +3

Query: 180 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 350
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 351 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLXGENPLQVLVTAIINSGP 530
           RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LL  +NPLQVLV A+   GP
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120

Query: 531 R 533
           R
Sbjct: 121 R 121



 Score =  128 bits (308), Expect = 1e-30
 Identities = 63/84 (75%), Positives = 70/84 (83%)
 Frame = +1

Query: 529 PXEDXTRIGRAGTVRRXAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAXELINA 708
           P ED TRIG AGTVRR AVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A E+INA
Sbjct: 120 PREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINA 179

Query: 709 AKGSSNPYAIKXKDXLXRVVKSXR 780
           AKGSSN YAIK KD L RV KS R
Sbjct: 180 AKGSSNSYAIKKKDELERVAKSNR 203


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = +3

Query: 372 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLXGENPLQVLVTAIINSGP 530
           V+ L N +M     +GKK  A +IV  A  II    GENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 506 DCHYQLWTPXKXRLGSVVRVQFVVXPLMFHPCAES 610
           DC  QLW+  + ++     +++VV  + F+P  ES
Sbjct: 317 DCKIQLWSILRHKILHWTELEYVVSTICFYPDGES 351


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 195 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 338
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 431 GRTYCQTCV*NYSLVXWRKPSASTRDCHYQLWT 529
           G TYC  C     L+ W K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,145
Number of Sequences: 5004
Number of extensions: 61180
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)