Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O14
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       38   2e-04
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 20/45 (44%)
 Frame = +3

Query: 723 PXPPPXGXXPXQPXXGXPPNPXXXPATPPXXPPXGPXPXPPXQNP 857
           P P P    P  P  G PPNP   P      PP GP   PP QNP
Sbjct: 23  PQPSPH-QSPQAPQRGSPPNPSQGP------PPGGPPGAPPSQNP 60



 Score = 29.5 bits (63), Expect = 0.044
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
 Frame = +3

Query: 756 QPXXGXP---PNPXXXPATPPXXPPXGPXPXPPXQNPP 860
           QP  G P   P+P   P  P    P  P   PP   PP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.1 bits (57), Expect = 0.23
 Identities = 14/52 (26%), Positives = 16/52 (30%)
 Frame = +1

Query: 733 RPXXXXPXNPPXXXPPTPXXPPXPPPXXPQXGXAPTPPXKTPXXTPXXSXXS 888
           +P        P    P P   P   P  PQ G  P P    P   P  +  S
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
 Frame = +1

Query: 730 PRPXXXXPXNPPXXXPPTPXX--PPXPPPXXPQXGXAPTPPXKTP 858
           P      P   P   P  P    PP P    P  G    PP + P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 15/64 (23%), Positives = 17/64 (26%)
 Frame = +3

Query: 570 PPPIXXXKXRPXXSGSXFXATPXXPPXXPXSPXKGTPPLSLXXFPQXPXWPPXPPPXGXX 749
           PPP          S S   +    P      P  G P   +         PP P   G  
Sbjct: 380 PPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSM 439

Query: 750 PXQP 761
           P  P
Sbjct: 440 PTMP 443



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
 Frame = +3

Query: 654 PXSPXKGTPPLSLXXFPQXPXW--PPXP---PPXGXXPXQPXXGXPPNPXXXPAT 803
           P S   G  P S    PQ P    PP P   PP G  P  P    P      PA+
Sbjct: 16  PSSGAPGPQP-SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 773 PPQPXPXPRXPPPPS 817
           PP+P P P  PPP S
Sbjct: 338 PPKPAPPP--PPPSS 350



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 775 PPTPXXPPXPP 807
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,173
Number of Sequences: 438
Number of extensions: 4673
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)