Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O08
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    28   1.5  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   6.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.0  

>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = -1

Query: 232 SV*LAHILEEGQNFLLLFNKYGIHIF*LYGARFWYCTAERDGYKPSQEIKTRLHGFQPRS 53
           SV L H+L EG+N L       IH         W   +E   +K  +E+  +L+GF    
Sbjct: 102 SVVLDHLLNEGENTLEEVKPSEIH-----PHMSWSSKSEGKMFKIPEELLNKLNGFGALE 156

Query: 52  KLSKS*GIPYSESXLN 5
           K  KS     S S L+
Sbjct: 157 KQKKSFSFFTSASLLH 172


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 272 RYHSLCQFYNIHHQ--CLVGSHLG 207
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 349
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 687 SRFPCEXPYLAAASGLMRPCCIFVT*IFCSTSIFINILGYTSYGAGTTKPWQSG 526
           SRF  E  +L   + L+  CCIF     CS S+F     +       T P + G
Sbjct: 711 SRFTTEINFLRCFASLLHNCCIFYAYRACS-SLFGENKSHKRIEKTNTSPQEPG 763


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 822 PPGTVNESGXSSSKRSCQ-YPQXSMSAFGLHY 730
           PPG +  +       +CQ + + SMS FG+HY
Sbjct: 505 PPGILTSTISLGQPLTCQGWQRDSMSLFGMHY 536


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 747 LTYFXEDIGMNAYYYYXHSHLPFLVDI 827
           +TY+ + +  N  YY   S  PFL D+
Sbjct: 319 ITYYGKILNANRTYYLLRSQPPFLTDM 345


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 197 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 289
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,218
Number of Sequences: 5004
Number of extensions: 63593
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)