Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_O06
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 54 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 1e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 2e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 2e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 44 4e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 5e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 7e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 1e-04
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 4e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 9e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 9e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.003
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.005
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 35 0.014
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 35 0.014
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.019
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.024
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.024
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.043
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.057
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.057
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.17
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.23
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.30
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.30
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.40
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.40
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.40
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 1.2
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 1.2
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 6.5
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 8.6
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 53.6 bits (123), Expect = 4e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +3
Query: 465 SNKEMKVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEISNCRIVR 638
+N K+NWA+ G + K+ ++ + IFVGDLSP + + FA + + +I+
Sbjct: 161 TNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMT 220
Query: 639 DPQTLKSKGYAFVSF 683
DPQT S+GY FV F
Sbjct: 221 DPQTNVSRGYGFVRF 235
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 274 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEF 408
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 32.7 bits (71), Expect = 0.075
Identities = 18/92 (19%), Positives = 41/92 (44%)
Frame = +3
Query: 408 YVSHGRRPQRWPP*TSEWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 587
Y S+ Q P + +SN+ ++ G+ + +++G+L P + +
Sbjct: 50 YKSNDEPVQSQDPISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFI 109
Query: 588 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
++ + G+ +++R+ T + GY FV F
Sbjct: 110 QQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 29.1 bits (62), Expect = 0.92
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 274 TLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGND---PYAFLEFT 411
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 522 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 692
DT+N +FVG LS + L+ F FGEI +I KG FV FV +
Sbjct: 299 DTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNR 348
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +3
Query: 456 EWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 635
E N E P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+
Sbjct: 74 EVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIM 133
Query: 636 RDPQTLKSKGYAFVSF 683
R+P T S+G+ F+SF
Sbjct: 134 REPVTKASRGFGFLSF 149
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK-KAMPKLPSRX 719
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G+ F++F K + ++ S+
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 720 *MASGWDXDP 749
G DP
Sbjct: 225 HHLDGKIIDP 234
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 513 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
P+ + +FVG + + R F FG + + ++ D T + +G+ FV++
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 510 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKGY +V F
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FVG+LS + L AF G+I + R+ DPQ+ + KG+ +V+F
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 238 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 378
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +3
Query: 453 SEWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 632
SE +S + AT G P T S ++VG+L P + +L E F G +++ R+
Sbjct: 57 SESTSTPTNASSVATPSGTAP-TSAS----LYVGELDPSVTEAMLFELFNSIGPVASIRV 111
Query: 633 VRDPQTLKSKGYAFVSF 683
RD T +S GYA+V+F
Sbjct: 112 CRDAVTRRSLGYAYVNF 128
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 480 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS 659
++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C++ D + +
Sbjct: 152 RIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNA 207
Query: 660 KGYAFVSF 683
KGY FV F
Sbjct: 208 KGYGFVHF 215
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 274 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 375
+LYVG LDPSVTE L LF IG V ++ R+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCH 417
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 528 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+N ++++ +L EI + F FGEI++ +V+D Q K +G+ FV++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNY 308
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGN-DPYAFLEF 408
+++ NLDP++ L F G + CK+ + E GN Y F+ F
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHF 215
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 43.6 bits (98), Expect = 4e-05
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 498 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 671
+P + P D N +FV +L I T L E F+ FG I +C + P T SKGY
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 672 FVSF 683
FVSF
Sbjct: 466 FVSF 469
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKK 692
I+VG+L +++ L E F PFG S ++ + ++ SK +AF++F K
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENK 76
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FVG+L+ E E L F G I RIVRDP+T KG+A++ F
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 271 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 408
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 522 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG+AF+ +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 256 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEF 408
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +3
Query: 531 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
NH +FVG+L ++ L +AF+ + + ++VRD + K++G+ FVSF
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSF 77
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 247 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 408
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 692
+FV L+P + L F+ FG+I +C+++RD +T S YAF+ F K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNK 295
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEF 408
L+V L+P + L +F + G + C++IR E G+ YAF+EF
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 268 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 408
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 540 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
++FVG+L P ++ +L + F+ G++ V + +SKGY FVS+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 256 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEF 408
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGD-VKGCKIIREPG--NDPYAFLEF 408
L+VGNLDP V E L F +G VK ++ R+ + Y F+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 638 RSSNAQIQGLCFCIICKESDAEAAIQAMNGQWLGSXSIRTNWSTRKPPXKGVNEG 802
R N + +G F A+AAI+AMN Q+L + I +++ ++ KG G
Sbjct: 133 RDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR-EGKGERHG 186
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 39.1 bits (87), Expect = 9e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+ VG+L+P + ++L AF PFGEI + + R + + + YAFV F
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEF 53
Score = 34.7 bits (76), Expect = 0.019
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 259 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEF 408
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF 53
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FVG++ ++ + E F G + ++V DP+T KGY F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 408
++VGN+ V+E + +F Q+G VK K++ +P Y F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 692
+F+ LS + + + + F +G I R+VR+ T KS GYAFV F ++
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 686
+FVG+L + L+ F G++ + RI D + + KGYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 549 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
V +LS + LR+ F FG I + +D +T ++KG+AFVS+
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FVG+L E L+E F G+I R++ T K KG+ FV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 369
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 695
+FV ++SP + + LR F FGE+ + + +P T S G +SF K++
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRS 146
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.7 bits (76), Expect = 0.019
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 504 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG A + +
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 271 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 378
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 378
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.3 bits (75), Expect = 0.024
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +3
Query: 429 PQRWPP*TSEWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIET--NILREAFA 602
P P W S +E + SP D SN ++V +L + T + L + F+
Sbjct: 354 PDNKPQSIVHWDSLRESSPSIPNSP-----IDPSN---LYVKNLDDTVITCKSQLEDLFS 405
Query: 603 PFGEISNCRIVRDPQTLKSKGYAFVSF 683
PFG I + + P + SKGY FV+F
Sbjct: 406 PFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.3 bits (75), Expect = 0.024
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FV +L+ + + + L F+ G I + +V +P+T +++GY FV+F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FV +L E L F FG ++ ++V+DP T +S G F+ F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.043
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
+FV L+ + + L + F G + + +IVRD + +SKG A+V F
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 537 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
H + V ++ + ++ F PFG+I + RD Q +SKG+ ++ +
Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.1 bits (72), Expect = 0.057
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 528 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
S +F+ +L+ + L+ F PFG++ + D +T KG+A++ F
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.057
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 683
I+VG LS IE++ L F+ FG +SN I+ + + + +A+++F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 519 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 686
++T+ ++F+G+L + EAF FG+I + +I L K AFV F+
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFL 342
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 647 NAQIQGLCFCIICKESDAEAAIQAMNGQWLGSXSIRTNWSTRKPP 781
N +GL F +A+ +Q +NG + +R W + PP
Sbjct: 269 NGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPP 313
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
++VG++ E+ + + F G + + ++V DP++ + KGY F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 408
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 491 PINLHFLVRGPLACSWRPALWPPPV*HVNSRNAYGSFPGSRIILQPFTS-PI*PN 330
P + H + PL S +P L PPPV V S S P + QP + P+ PN
Sbjct: 134 PHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAM 698
++VG++ + L+ FA G ++ I+ D T KG+A++ F + ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 271 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 411
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.3 bits (65), Expect = 0.40
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Frame = +3
Query: 468 NKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 632
N+ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 386 NRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNF 445
Query: 633 VRDPQTLKSKGYAFVSFVKKA 695
R+ K AFV+F A
Sbjct: 446 FRE------KNCAFVNFTSLA 460
Score = 29.9 bits (64), Expect = 0.53
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 474 EMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 638
E+KV W + + + ++F+G+L I + +RE PFG I +IV
Sbjct: 180 EVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVT 239
Query: 639 DPQTLKSKGYAFVSFVKKAMPKLP 710
+ + + + ++ KA+ +LP
Sbjct: 240 E-RNIAFVHFLNIAAAIKAVQELP 262
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 271 KTLYVGNLDPS--VTEVFLCTLFGQI 342
KT+YVGNL P+ + E+ C G I
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRTGPI 140
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 525 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
TS ++++ L P L FG++S+ + + D +T KGY F F
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 659 QGLCFCIICKESDAEAAIQAMNGQ 730
+G CFC SDAE AI ++G+
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGK 374
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 683
I++ +L + + + E PFG++ + +++++ SKG+ F F
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 543 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 695
+FVG L+ + L+ F PFG I N +I KG FV + +K+
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKS 343
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 626 SHSTRSSNAQI-QGLCFCIICKESDAEAAIQAMNGQWLGSXSIRTNWSTRKPPXKGVN 796
S S S+ +++ G FC + + + +IQ NG + G S TN+S P N
Sbjct: 206 SSSVPSTPSEVAMGHNFCPMSRNDPSLQSIQQTNGFYSGHNSPHTNYSASTPSFNHFN 263
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 277 LYVGNLDPSVTEVFLCTLFGQIGDVKG 357
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 608 W*D-IELSHSTRSSNAQIQGLCFCIICKES 694
W D + L T +S ++I G FC +C+E+
Sbjct: 483 WKDMLILKDQTDTSESRITGFYFCCLCREN 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,259
Number of Sequences: 5004
Number of extensions: 69740
Number of successful extensions: 240
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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