Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O04
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    30   0.52 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    26   8.4  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 150 KSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTK 272
           KS   I+AKLL++     +N LKLN T+K     +  A+TK
Sbjct: 39  KSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETK 79


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 238 LTPIWFHRPKPRRLSXIGKEMLIENVLHVQPXNKNFDDI 354
           L PI+F + +PRR   + K+  I N     P  KN  D+
Sbjct: 6   LYPIYFDKSRPRRFRCVPKDKAILN-----PLAKNIADV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,432
Number of Sequences: 5004
Number of extensions: 64881
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)