Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O04
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...   128   7e-30
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    29   3.4  

>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score =  128 bits (308), Expect = 7e-30
 Identities = 58/68 (85%), Positives = 63/68 (92%)
 Frame = +1

Query: 340 NFDDIKHTTLSERGALREAARCLKCADAPCQKSCPTQIDVKSFITSIANKNYYGAAKAIL 519
           +F DIKHTTLSERGAL+EA RCLKCADAPCQKSCPTQ+DVKSFITSI+NKNYYGAA+ IL
Sbjct: 73  DFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGAARQIL 132

Query: 520 SDIPSGLT 543
           SD P GLT
Sbjct: 133 SDNPLGLT 140



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +2

Query: 548 GMVCPTSDLCVGGCNLHATEEGAINIGGLXHFAVDXFMKMGL 673
           GM+CPTSDLCVG CNL A+EEGAINIGGL  +A D F +M +
Sbjct: 142 GMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNV 183



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
 Frame = +3

Query: 177 LLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKXHWKRNADRKC-TTC--PTLXQEFR 347
           LLSK+ PDIE+LL LNP V+   N VPSA TKK K +WKRN ++ C +TC    L  +FR
Sbjct: 16  LLSKDSPDIESLLILNPKVQDKANAVPSAVTKKNKHNWKRNEEKGCGSTCGESKLKNDFR 75


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 204 ENLLKLNPTVKPYTNLVPSAQTKKIKXHWKRNADRKCTTCPTLXQE-FRRYQTHDALRTW 380
           ++++  NP ++  T+ +P   +   +  W R ADR     P    E  RRY      ++ 
Sbjct: 55  QDIIPYNPHIRTRTSRLPIRPSSSRRISWSREADRVREISPRSEPEPIRRYDPPYLQKSQ 114

Query: 381 SFT 389
           SF+
Sbjct: 115 SFS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,981,729
Number of Sequences: 27780
Number of extensions: 390718
Number of successful extensions: 800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)