Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O03
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   1.2  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   3.7  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    29   6.5  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    28   8.6  
05_03_0618 - 16262826-16263097,16263111-16263183                       28   8.6  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   8.6  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 394 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 498
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 462 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 376
           +V    GVM P + +L  LLGE+++KL G
Sbjct: 7   IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35


>05_03_0031 -
           7534327-7534480,7535546-7535649,7535724-7535793,
           7535889-7535932,7536042-7536146,7536223-7536344,
           7536807-7536894,7536966-7537052,7537718-7537786,
           7537859-7538188,7539777-7539824,7540003-7540069,
           7540150-7540208,7541220-7541453,7541536-7541601,
           7541684-7541883,7542104-7542197,7542295-7542414,
           7542596-7542703,7542808-7542871,7543378-7543409,
           7546049-7548007
          Length = 1407

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 460 QQNHNKIAFGDSKDKPARXSPGSLPPCWKTQSLLQDH 570
           ++NHN ++    K  P R +  SLPP W  +S  + H
Sbjct: 20  KKNHNSLS---GKAPPTRGNCDSLPPVWNAKSASECH 53


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 543 PTRG*TSRRLSCWFVFGVTECNFVVVLLVDQLEGVMVPFVYELDSLLGEDHSKL---DGE 373
           P    T+   S + +  V E       +   L GVM   + +L +LLG+++ KL    GE
Sbjct: 64  PANSDTTSLTSFYEIGNVAEAVKTFQQMASALTGVMTSVINKLTALLGKEYMKLKGVQGE 123

Query: 372 VRF 364
           V F
Sbjct: 124 VEF 126


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 162 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 76
           S  C+CG+RS+R    +E +  +  LG V
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 181 QLYMSVVI---GEYETAIAKCSEYLKEKKGXVIKEAVERLIENGKRNTMDFAYQLWTKDG 351
           +LY+ +++   G Y+ A+   S     + G  +KE  + L+E+    T++   +L T  G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550

Query: 352 KEIVK 366
             + +
Sbjct: 551 DPMTR 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,197
Number of Sequences: 37544
Number of extensions: 420464
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)