Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   185   8e-48
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   184   1e-47
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   7.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  185 bits (450), Expect = 8e-48
 Identities = 83/117 (70%), Positives = 95/117 (81%)
 Frame = +3

Query: 135 LSVARPLXSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 314
           ++ ARP  S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 315 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 485
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +1

Query: 514 AAVAATGVPALVQARGHIIEKIPELPLVVADKVQEINXTKQAV 642
           +AVAA+GVP+L+ ARGH IE+IPE+PLVV D VQ    TK+AV
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAV 168



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 24/57 (42%), Positives = 39/57 (68%)
 Frame = +2

Query: 644 SFLRRLKAWSDILKVYKSXRSSCW*G*MRNRRXIQXKGPLIIFNKDQGLTRPFRXIP 814
           + L+ +KA+ D++KV  S +     G +RNRR +Q +GPL++FN+D G+ + FR IP
Sbjct: 169 ALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIP 225


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  184 bits (448), Expect = 1e-47
 Identities = 82/117 (70%), Positives = 95/117 (81%)
 Frame = +3

Query: 135 LSVARPLXSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 314
           ++ ARP  S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 315 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 485
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 24/57 (42%), Positives = 39/57 (68%)
 Frame = +2

Query: 644 SFLRRLKAWSDILKVYKSXRSSCW*G*MRNRRXIQXKGPLIIFNKDQGLTRPFRXIP 814
           + L+ +KA+ D++KV  S +     G +RNRR +Q +GPL++FN+D G+ + FR IP
Sbjct: 169 ALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIP 225



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +1

Query: 514 AAVAATGVPALVQARGHIIEKIPELPLVVADKVQEINXTKQAV 642
           +AVAA+GVP+L+ ARGH IE+IPE+PLVV D VQ    TK+AV
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAV 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 209 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 304
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 196 APCTVSLFSEYTDXKGRATDRLISLL 119
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,545
Number of Sequences: 5004
Number of extensions: 59992
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)