Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O02
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   164   8e-41
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  164 bits (398), Expect = 8e-41
 Identities = 77/114 (67%), Positives = 88/114 (77%)
 Frame = +3

Query: 144 ARPLXSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 323
           ARPL +VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 324 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 485
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 26/45 (57%), Positives = 40/45 (88%)
 Frame = +1

Query: 514 AAVAATGVPALVQARGHIIEKIPELPLVVADKVQEINXTKQAVIF 648
           +A+AA+G+PAL+QARGH+I+++ E+PLVV+DKV+    TK+AV+F
Sbjct: 125 SAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVF 169



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/56 (46%), Positives = 34/56 (60%)
 Frame = +2

Query: 647 FLRRLKAWSDILKVYKSXRSSCW*G*MRNRRXIQXKGPLIIFNKDQGLTRPFRXIP 814
           FLRR   W+DI KVY S R+    G +RNR+  Q  GP++I+ +D    R FR IP
Sbjct: 169 FLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIP 224


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 276 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 446
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 447 PTKP 458
             KP
Sbjct: 197 APKP 200


>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 599 TTKGSSGIFSIMCPLA*TSAGTPVAATAAGQGRSPLSEVDATVPAPP 459
           TT  + G  ++  P + T+AG+   A +A  G    +   ATV APP
Sbjct: 100 TTTVAPGATTVRSPGSVTTAGSATTAGSATTGSPSAATTAATVAAPP 146


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 341 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 451
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,438
Number of Sequences: 27780
Number of extensions: 372344
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)