Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O01
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...    53   3e-07

>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/58 (41%), Positives = 30/58 (51%)
 Frame = +1

Query: 532 RGXXVTXLVXQCYGNCXXPGXGXPXPVHYGXQXHXMVPISSPLGXQCPXAVGAAYAYK 705
           RG  +     QC+GN    G G   P+HYG        +SSP+  Q P AVGAAY+ K
Sbjct: 235 RGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLK 292



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 38/86 (44%)
 Frame = +2

Query: 212 YVXXXXFFNEXXYXPXPIYRVMXXXGXXXDKNXXPNLXXAXLIXXXKXXVXLXXMDXILY 391
           +V    F  E        YRV+   G     +    +     +        L  MD I +
Sbjct: 129 FVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFF 188

Query: 392 ESQRQGRISFYMTNYGEXGXHIGXAS 469
           E+QRQGRISFY+T++GE   +I  A+
Sbjct: 189 EAQRQGRISFYLTSHGEEAINIASAA 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,230
Number of Sequences: 37544
Number of extensions: 167347
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)