Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_O01
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...    74   1e-13
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...    74   1e-13
Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical pr...    38   0.012

>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 42/70 (60%)
 Frame = +2

Query: 260 PIYRVMXXXGXXXDKNXXPNLXXAXLIXXXKXXVXLXXMDXILYESQRQGRISFYMTNYG 439
           PIYRV    G   DK+  PN      +   K    L  MD ILY+SQRQGRISFYMT++G
Sbjct: 61  PIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSFG 120

Query: 440 EXGXHIGXAS 469
           E G H+G A+
Sbjct: 121 EEGNHVGSAA 130



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/59 (45%), Positives = 35/59 (59%)
 Frame = +1

Query: 532 RGXXVTXLVXQCYGNCXXPGXGXPXPVHYGXQXHXMVPISSPLGXQCPXAVGAAYAYKE 708
           RG  +   + QCYGN    G G   P+H+G +    V ISSPL  Q P AVG+AYA+K+
Sbjct: 151 RGYTMENFMNQCYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQ 209


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 42/70 (60%)
 Frame = +2

Query: 260 PIYRVMXXXGXXXDKNXXPNLXXAXLIXXXKXXVXLXXMDXILYESQRQGRISFYMTNYG 439
           PIYRV    G   DK+  PN      +   K    L  MD ILY+SQRQGRISFYMT++G
Sbjct: 60  PIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSFG 119

Query: 440 EXGXHIGXAS 469
           E G H+G A+
Sbjct: 120 EEGNHVGSAA 129



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/59 (45%), Positives = 35/59 (59%)
 Frame = +1

Query: 532 RGXXVTXLVXQCYGNCXXPGXGXPXPVHYGXQXHXMVPISSPLGXQCPXAVGAAYAYKE 708
           RG  +   + QCYGN    G G   P+H+G +    V ISSPL  Q P AVG+AYA+K+
Sbjct: 150 RGYTMENFMNQCYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQ 208


>Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical
           protein Y43F4A.4 protein.
          Length = 105

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +2

Query: 260 PIYRVMXXXGXXXDKNXXPNLXXAXLIXXXKXXVXLXXMDXILYES 397
           PIYRV    G   DK+  PN     L+   K    L  MD ILY+S
Sbjct: 60  PIYRVTNAVGDVIDKSQDPNFDEQSLLKMYKTMTQLNIMDRILYDS 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,209,501
Number of Sequences: 27780
Number of extensions: 121926
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)