Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N22
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    73   5e-14
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    71   2e-13
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    42   1e-04
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.5  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 38/86 (44%), Positives = 51/86 (59%)
 Frame = +1

Query: 184 GPYSQAILADKXLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 363
           GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ VL   G+SL  +VK 
Sbjct: 51  GPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKV 109

Query: 364 TVLLASMDDFQTFNKVYAEYFPKACP 441
            + LA MDDF   NKVY E  P   P
Sbjct: 110 NIFLADMDDFAAVNKVYTEVLPDPKP 135


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 35/103 (33%), Positives = 53/103 (51%)
 Frame = +1

Query: 184 GPYSQAILADKXLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 363
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 364 TVLLASMDDFQTFNKVYAEYFPKACPXSNDIRSQSTTVGSSCG 492
            + L  +DDF   N+VY E  P   P    + +    + S  G
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGG 116


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +1

Query: 280 EAQTRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKACPXS 447
           + +   A++NL  +L   G S ++V   TV+L+SM  F  FN VY +YF    P S
Sbjct: 324 QGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNPPS 379



 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 181 VGPYSQAILADKXLYISGILGL 246
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 268 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 360
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,725
Number of Sequences: 5004
Number of extensions: 40742
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)