Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_N21
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 59  STATSRERSNWLSVCHNYKFVKNVADLRSY 148
           S   S+    WL V  NYK +   A  R Y
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREY 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 75  ASGVTGFPSATIISL*KMSLISARIAGSVARRLPNAATQVS 197
           +SGV     A  +S+  +S+I+AR AG       NAA   S
Sbjct: 628 SSGVLAKKVADRVSMLMISVITARHAGEYVCTAENAAGTAS 668


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 719 PPXGPGPPPXXXPXPPP 769
           P    GPPP   P  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 731 PGPPPXXXPXPPPPPXXXRPSPXXXXP 811
           PGP P     P  P     P+P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 740 PPXXXPXPPPP 772
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,900
Number of Sequences: 438
Number of extensions: 6822
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)